RNA id: TU1950474


Basic Information

Item Value
RNA id TU1950474
length 864
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1703704
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5980875 ~ 5983010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtcattagttgcctctgattgagaatcatacttaggtagcctgggttgcactgtttgtttgtgggtgattgtctatgttgatggcttgtttcagcacaggtctcatttgtagcttcacggtcgaatttggtttattgtttttgttactcgtttgtatagtgttcagtctttcttgattaaagatttgccatggacacttaccacgccgcatattggtcctctgatccttttcgcctctcctcttcagatgaagaggaggacggccgtgacagacagacaacaccgtCTGATTCACAGACTGACACATAGCAATGAATGTGATAGTATCTGTAGTCTGGCTGGTGTAGAGGCTAGCATCTATAAACACAGCTGCTGTTATGGGATCTGTAGTCTGACTGGTGTCTAGACTAGCATCTATAAACACAGCTGCTGTTATGGGATCTGTAGTCTGACTGGTGTCTAGACTGGCATCTATAAACACAGCTGCTGTTATGGGATCTGTAGTCTGACTGGTGTCTAGACTAGCATCTATAAACACAGCTGCTGTTAGGGGATCTGTAGTCTGACTGGTGTAGAGGCTAGCATCTATAAACACAGCTGCTGTTATGGGATCTGTAGTCTGGTGTAGAGGCTAGTATCTATAAACACAGCTGTTAGGGGATCGGTAATCTGACTGATGTCTAGACTAGCATCTATAAACACAGCTGTTATGGGATCTGTAGTCTGACTGGTGTCTAGACTAGCATCTATAAACACAGCTGCTGTTAGGGGATCTGTAGTCTGACTGGTGTCTAGACTAGCATCTATAAACACAGCTGTTAGGGGATCTGTAgtcaacatttacctggagataACTCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950473 lncRNA downstream 5990 5973366 ~ 5974885 (-) True G1703703
TU1950463 lncRNA downstream 29219 5950034 ~ 5951656 (-) False LOC118942843
TU1950465 lncRNA downstream 29219 5950034 ~ 5951656 (-) True LOC118942843
TU1950416 lncRNA downstream 68163 5912485 ~ 5912712 (-) True G1703667
TU1950415 lncRNA downstream 69512 5910985 ~ 5911363 (-) True G1703666
TU1950432 lncRNA upstream 57 5983067 ~ 5984055 (-) True G1703670
TU1950424 lncRNA upstream 1355 5984365 ~ 5986645 (-) False G1703669
TU1950427 lncRNA upstream 1355 5984365 ~ 5986645 (-) False G1703669
TU1950428 lncRNA upstream 1355 5984365 ~ 5986645 (-) False G1703669
TU1950426 lncRNA upstream 8688 5991698 ~ 5996426 (-) False G1703669
XR_005038480.1 mRNA downstream 29264 5950870 ~ 5951611 (-) False LOC118942843
XM_036956695.1 mRNA upstream 84125 6067135 ~ 6177614 (-) False LOC110499738
XM_036956694.1 mRNA upstream 84125 6067135 ~ 6183123 (-) False LOC110499738
XM_036956698.1 mRNA upstream 84125 6067135 ~ 6184666 (-) False LOC110499738
XM_036956697.1 mRNA upstream 84125 6067135 ~ 6187073 (-) False LOC110499738
XM_036956696.1 mRNA upstream 84125 6067135 ~ 6188810 (-) True LOC110499738
TU1950464 other downstream 17452 5950034 ~ 5963423 (-) False LOC118942843
TU1950407 other downstream 81094 5899342 ~ 5899781 (-) True G1703658
TU1949828 other downstream 524764 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 550703 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 554283 5420336 ~ 5426592 (-) True LOC118942837
TU1950429 other upstream 8688 5991698 ~ 5996426 (-) True G1703669
TU1950752 other upstream 322543 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 322543 6305553 ~ 6308220 (-) False G1703878
TU1950755 other upstream 322543 6305553 ~ 6308220 (-) False G1703878
TU1950757 other upstream 322543 6305553 ~ 6308220 (-) True G1703878

Expression Profile