RNA id: TU1950048


Basic Information

Item Value
RNA id TU1950048
length 1249
RNA type TUCP
GC content 0.45
exon number 4
gene id G1703427
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5983345 ~ 5994810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATAGACAGCGAGGTGTTCCTGGCCTTCTCTACCTACGCCACTGTCGTCGTCCTCAAGATGATGCTGATGTCTCCTATGACTGGATACTTCCGCTTCACGAGAAAGGCATTTGCTAACCAGGAGGACACCAGTCTGGCCTCCTCTACGGAGGACAAGAAGAAGCTGGTCAGGGTGGATCCTGATGTGGAGAGAGTACGAAGaTGCCACCAGAACGACCTGGAGAACATCATCCCGTTCGTAGTGATTGGTCTGCTGTATACCCTGACGGGGCCCGACCTCTCCACTGCTCTGCTCCACTTCCGGGTGTTTGTTGGTTCCAGGCTCTTCCACACGGTGGCCTACGTCCTCCCCCTGCCCCAACCCAGCAGAGCTGTGGCCTTCCTCATCGGACTGGTCACCACCAGCTCTATGGCCTCTAGGGTTCTGATTACTGCGCTTTATCTGTAGAGGCctgaggggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccactacaagGGCCTTGTCTTTGAGGGTCTCCATTGAATGTGCTTGAGGAGGATACATTTACGTTTATCAAAGTTGTTCCTTCTGTGTCTCTGATAGGATTATAACATGCTGTTACtgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgacagtacatatcagaatgttactgcagtacatatcagaatgttactgctgtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgacagtacatatcagaatgttactgacagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgacagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcggtacatatcagaatgttactgcaGTATCTGTGTCTCTGATAGGATTATAACATGCTGTTACtgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950061 lncRNA upstream 32262 5950516 ~ 5951083 (+) True G1703435
TU1950092 lncRNA upstream 39196 5941409 ~ 5944149 (+) True G1703466
TU1950083 lncRNA upstream 69716 5913218 ~ 5913629 (+) True G1703457
TU1950082 lncRNA upstream 73089 5909955 ~ 5910256 (+) True G1703456
TU1950077 lncRNA upstream 85816 5897213 ~ 5897529 (+) True G1703451
TU1950107 lncRNA downstream 3822 5998632 ~ 5999038 (+) True G1703478
TU1950115 lncRNA downstream 16556 6011366 ~ 6013717 (+) True G1703483
TU1950122 lncRNA downstream 34529 6029339 ~ 6030265 (+) True G1703490
TU1950134 lncRNA downstream 58694 6053504 ~ 6066427 (+) True G1703499
TU1950137 lncRNA downstream 60684 6055494 ~ 6126262 (+) True G1703500
XM_036956684.1 mRNA upstream 104054 5865290 ~ 5879291 (+) False LOC118936346
XM_036956685.1 mRNA upstream 105637 5865290 ~ 5877708 (+) False LOC118936346
XM_036956681.1 mRNA upstream 326758 5611886 ~ 5656587 (+) False LOC110519381
XM_036956489.1 mRNA downstream 233271 6228081 ~ 6252333 (+) False mrps33
NM_001171863.1 mRNA downstream 233391 6228201 ~ 6251678 (+) False mrps33
XM_036956701.1 mRNA downstream 265003 6259813 ~ 6300981 (+) False LOC110500907
XM_036956699.1 mRNA downstream 265007 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA downstream 265009 6259819 ~ 6304321 (+) False LOC110500907
TU1949988 other upstream 265644 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 386917 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 728460 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 728460 5254165 ~ 5254885 (+) True G1702856
TU1948974 other upstream 794498 5184474 ~ 5188847 (+) True LOC110516940
TU1950617 other downstream 233304 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 233304 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 233304 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 233304 6228114 ~ 6252320 (+) False mrps33
TU1950621 other downstream 233304 6228114 ~ 6252320 (+) False mrps33

Expression Profile