RNA id: TU1950426


Basic Information

Item Value
RNA id TU1950426
length 4128
lncRNA type antisense_over
GC content 0.40
exon number 5
gene id G1703669
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5984365 ~ 5996426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCTTGAAATTCTAATTTTATTTTCTGAACTGACTGGCCTCAACATCCTGTTGCTGCTAATAGAGAATGAGACTCAACAGAGGCTTGATTCTGGGACGACTGTTAGAGGGAATGGCATTActcatcaagtttagattgtccCTGAGTGGCCTCCAATTTCTAGTGGAAACTGTTGTACTGTCAGTACTCTCAGTACTGTTGTACTGtcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactacagtaacattctgatatgtactgccagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtaccgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgccagtaacattctgatatgtactgcCAGTAACAGCGTGTTATAATCCTATCAGAGACACAGAAGGGacattctgatatgtactgcagtaacattctgatatgtacCGCAGTAACATTCTGAAATGTACTGCAGTAACATTCTGAAATGTACTGCggtaacattctgatatgtaccgcagtaacattctgatatgtactgcaGTAACATTCTGAAATGTACTGCggtaacattctgatatgtactgcggtaacattctgatatgtactgtCAGTAACATTCTGAAATGTACtgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcaGTAACATTCTGAAATGTACTGCggtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcggtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtCAGTAACATTCTGAAATGTACtgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgaaatgtactgcagtaacattctgatatgtactgcagtaacattctgaaatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcaGTAACAGCATGTTATAATCCTATCAGAGACACAGATACtgcagtaacattctgatatgtaccgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtacagcagtaacattctgatatgtactgcagtaacattctgatatgtactgtcagtaacattctgatatgtactgcagtaacattctgatatgtactgcagtaacattctgatatgtactgcaGTAACAGCATGTTATAATCCTATCAGAGACACAGAAGGAACAACTTTGATAAACGTAAATGTATCCTCCTCAAGCACATTCAATGGAGACCCTCAAAGACAAGGCCcttgtagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtcccctcagGCCTCTACAGATAAAGCGCAGTAATCAGAACCCTAGAGGCCATAGAGCTGGTGGTGACCAGTCCGATGAGGAAGGCCACAGCTCTGCTGGGTTGGGGCAGGGGGAGGACGTAGGCCACCGTGTGGAAGAGCCTGGAACCAACAAACACCCGGAAGTGGAGCAGAGCAGTGGAGAGGTCGGGCCCCGTCAGGGTATACAGCAGACCAATCACTACGAACGGGATGATGTTCTCCAGGTCGTTCTGGTGGCAtctggggaatgagagagagatagttcaGATTAtctggggaatgagagagagagagttcagatcatctggggaatgagagagagagagagagagttcagattatctggggaatgagagagagagagagagagagagagttcagattatctggggaatgagagagagagttcagatcatctggggaatgagagagagagagttcagattATCTggggaatcagagagagagagagttcagagagagagagagttcagattATCTggggaatgacagagagagagttcaaATTGtctggggaatgagagagagagcgagagagagagttcagaatatctagggaatgagagagagagagttcagattATCTgggaaatgagagaaagagagagagagttcagatcatctggggaatgagagagagagagttcagattatctggggaatgagagagagagacttcagaTTATctagggaatgagagagagagagttcagatcATCTGgggaatgatagagagagagttcagattatctggggaatgagagagagagagttcagattatctagggaatgagagagagagttcagattATCTgggaaatgagagaaagagagagagagttcagatcatctggggaatgagagagagagagttcagattatctggggaatgagagagagagagttcagattatctagggaatgagagagagagagttcagatcATCTGgggaatgatagagagagagttcagattatctggggaatgagagagagagagagttcagATTAtctggggaatgagagagagagagttcagattatctagggaatgagagagagagagagttcagattatctagggaatgagagagagagagagttcagatcatctggggaatgagagagagagagagttcagatcatctggggaatgagagagagagagttcagatcATCTGgcgaatgagagagacagagttcagATCAGTATATCAAAATATTTGGAAAACTAAAACGTCTAAATTAATTCTATTAAAAACAGGATTTCTACCATCTCTTTCCAGTCATGGTTACAGCAGCTGTACGTCAGCGTGAACCAGAAAGATATGCTTCAATTATATTTCTACGGGGATACCTTCGTACTCTCTCCACATCAGGATCCACCCTGACCAGCTTCTTCTTGTCCTCCGTAGAGGAGGCCAGACTGGTGTCCTCCTGGTTAGCAAATGCCTGGAGGGAGGTGGAAGCAAGGAGGGACATGTTTTATCTCGTTCAATTTCCACCTCGGCTCTGTTAAGCCAGGGAGGGTCAAGGTTCATTCATTACGTatcctgtatttaactaggcaagtcagcaaagaacaaattcgtatttacaatgacggtcatttaagaacaaattcgtatttacaatgacggtcatGTAACGGTTGGAAGAAGGTGGAAGaaggtggaagaaggtgaagaggaccaaggtgcagcgtggcacGTGTTCATGGTAGATTGAATAAAGAAACTGAacaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950424 lncRNA downstream 5053 5984365 ~ 5986645 (-) False G1703669
TU1950427 lncRNA downstream 5053 5984365 ~ 5986645 (-) False G1703669
TU1950428 lncRNA downstream 5053 5984365 ~ 5986645 (-) False G1703669
TU1950432 lncRNA downstream 7643 5983067 ~ 5984055 (-) True G1703670
TU1950431 lncRNA downstream 7928 5979455 ~ 5983770 (-) False G1703670
TU1950490 lncRNA upstream 23534 6019960 ~ 6020452 (-) False G1703717
TU1950491 lncRNA upstream 23534 6019960 ~ 6020452 (-) False G1703717
TU1950492 lncRNA upstream 23534 6019960 ~ 6020452 (-) True G1703717
TU1950502 lncRNA upstream 42686 6039112 ~ 6041382 (-) False G1703725
TU1950503 lncRNA upstream 42686 6039112 ~ 6041723 (-) True G1703725
XR_005038480.1 mRNA downstream 40087 5950870 ~ 5951611 (-) False LOC118942843
XM_036956695.1 mRNA upstream 70709 6067135 ~ 6177614 (-) False LOC110499738
XM_036956694.1 mRNA upstream 70709 6067135 ~ 6183123 (-) False LOC110499738
XM_036956698.1 mRNA upstream 70709 6067135 ~ 6184666 (-) False LOC110499738
XM_036956697.1 mRNA upstream 70709 6067135 ~ 6187073 (-) False LOC110499738
XM_036956696.1 mRNA upstream 70709 6067135 ~ 6188810 (-) True LOC110499738
TU1950464 other downstream 28275 5950034 ~ 5963423 (-) False LOC118942843
TU1950407 other downstream 91917 5899342 ~ 5899781 (-) True G1703658
TU1949828 other downstream 535587 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 561526 5429468 ~ 5430172 (-) True G1703323
TU1949830 other downstream 565106 5420336 ~ 5426592 (-) True LOC118942837
TU1950752 other upstream 309127 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 309127 6305553 ~ 6308220 (-) False G1703878
TU1950755 other upstream 309127 6305553 ~ 6308220 (-) False G1703878
TU1950757 other upstream 309127 6305553 ~ 6308220 (-) True G1703878
TU1950779 other upstream 346315 6342741 ~ 6343182 (-) True G1703896

Expression Profile