RNA id: TU1950107


Basic Information

Item Value
RNA id TU1950107
length 269
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1703478
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5998632 ~ 5999038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatctcctcctctcagcctctcctcctctcagcatctcctcctctcagcatctcctcctctcagcctctcctcctctcagcatcTGTACAGCTCATTTAAAAACCGAGTCAGAAATACACAAATAGTATTTTGAAGATGACCTCTAATGTTATTTCCACATCAACAGTAAACCTTTGAAATGACCAGTTTAGTTTAGAACAATCAGCTAGCGACCAACGATGTTAATACGAAGGTGACTGACATTACCGTAAACCACCTCCACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950061 lncRNA upstream 47549 5950516 ~ 5951083 (+) True G1703435
TU1950092 lncRNA upstream 54483 5941409 ~ 5944149 (+) True G1703466
TU1950083 lncRNA upstream 85003 5913218 ~ 5913629 (+) True G1703457
TU1950082 lncRNA upstream 88376 5909955 ~ 5910256 (+) True G1703456
TU1950077 lncRNA upstream 101103 5897213 ~ 5897529 (+) True G1703451
TU1950115 lncRNA downstream 12328 6011366 ~ 6013717 (+) True G1703483
TU1950122 lncRNA downstream 30301 6029339 ~ 6030265 (+) True G1703490
TU1950134 lncRNA downstream 54466 6053504 ~ 6066427 (+) True G1703499
TU1950137 lncRNA downstream 56456 6055494 ~ 6126262 (+) True G1703500
TU1950133 lncRNA downstream 67521 6066559 ~ 6067288 (+) True G1703498
XM_036956687.1 mRNA upstream 4842 5986775 ~ 5993790 (+) False LOC110527635
XM_036956688.1 mRNA upstream 4842 5986775 ~ 5993790 (+) True LOC110527635
XM_036956690.1 mRNA upstream 11991 5979351 ~ 5986641 (+) False LOC118942842
XM_036956691.1 mRNA upstream 11991 5979399 ~ 5986641 (+) False LOC118942842
XM_036956689.1 mRNA upstream 11991 5979407 ~ 5986641 (+) False LOC118942842
XM_036956489.1 mRNA downstream 229043 6228081 ~ 6252333 (+) False mrps33
NM_001171863.1 mRNA downstream 229163 6228201 ~ 6251678 (+) False mrps33
XM_036956701.1 mRNA downstream 260775 6259813 ~ 6300981 (+) False LOC110500907
XM_036956699.1 mRNA downstream 260779 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA downstream 260781 6259819 ~ 6304321 (+) False LOC110500907
TU1950048 other upstream 3822 5983345 ~ 5994810 (+) True G1703427
TU1949988 other upstream 280931 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 402204 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 743747 5254165 ~ 5254885 (+) False G1702856
TU1949138 other upstream 743747 5254165 ~ 5254885 (+) True G1702856
TU1950617 other downstream 229076 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 229076 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 229076 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 229076 6228114 ~ 6252320 (+) False mrps33
TU1950621 other downstream 229076 6228114 ~ 6252320 (+) False mrps33

Expression Profile