RNA id: TU1950529


Basic Information

Item Value
RNA id TU1950529
length 323
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1703748
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6102200 ~ 6102552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTGGAAGACTCTTTAGTTGATGACTCTTTAGTTGATGACTCTTTAGTTGATGACTCTTTAGTTGATGACTCTTTAGTTGATGACTCTTTAGTTGAAGACTCTTTAGTTGATGACTCTTTAGTTGATGACTCTCTAGTTGAAGACTCTTTAGTTGAAGACTCTCTAGTTGAAGACTCTCTAGTTGATGACTCTCTAGTTGATGACTCTCTAGTTGATGACTCTTTAGCTGATGACTCTCTAGTTGATGACTCTTTAGCTGATGACTCTCTAGTTGAAGACTCTTTAGTTGAAGACTCTCTAGTTGAAGACTCTCTAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950520 lncRNA downstream 30951 6069975 ~ 6071249 (-) True G1703739
TU1950439 lncRNA downstream 35763 6053638 ~ 6066437 (-) True G1703675
TU1950437 lncRNA downstream 36594 6064401 ~ 6065606 (-) False G1703674
TU1950438 lncRNA downstream 36594 6064401 ~ 6065606 (-) True G1703674
TU1950503 lncRNA downstream 60477 6039112 ~ 6041723 (-) True G1703725
TU1950538 lncRNA upstream 24482 6127034 ~ 6127516 (-) True G1703756
TU1950557 lncRNA upstream 54557 6157109 ~ 6157418 (-) True G1703773
TU1950564 lncRNA upstream 70474 6173026 ~ 6174534 (-) True G1703780
TU1950568 lncRNA upstream 77211 6179763 ~ 6180160 (-) True G1703784
TU1950611 lncRNA upstream 99913 6202465 ~ 6226957 (-) False G1703794
XR_005038480.1 mRNA downstream 150589 5950870 ~ 5951611 (-) False LOC118942843
XR_005038446.1 mRNA upstream 415336 6517888 ~ 6518346 (-) False LOC118942797
XM_036956706.1 mRNA upstream 787971 6890523 ~ 6917536 (-) False LOC118942845
XM_036956707.1 mRNA upstream 787971 6890523 ~ 6917536 (-) True LOC118942845
XM_036956708.1 mRNA upstream 946344 7048896 ~ 7050907 (-) True LOC118942846
XM_036956709.1 mRNA upstream 1201053 7303605 ~ 7307397 (-) True LOC118942847
TU1950429 other downstream 105774 5991698 ~ 5996426 (-) True G1703669
TU1950464 other downstream 138777 5950034 ~ 5963423 (-) False LOC118942843
TU1950407 other downstream 202419 5899342 ~ 5899781 (-) True G1703658
TU1949828 other downstream 646089 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 672028 5429468 ~ 5430172 (-) True G1703323
TU1950752 other upstream 203001 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 203001 6305553 ~ 6308220 (-) False G1703878
TU1950755 other upstream 203001 6305553 ~ 6308220 (-) False G1703878
TU1950757 other upstream 203001 6305553 ~ 6308220 (-) True G1703878
TU1950779 other upstream 240189 6342741 ~ 6343182 (-) True G1703896

Expression Profile