RNA id: TU1950604


Basic Information

Item Value
RNA id TU1950604
length 3523
lncRNA type inter_gene
GC content 0.36
exon number 7
gene id G1703794
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6202465 ~ 6226957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAATATATGACAGGGAATGAAGTACCATACAGATTCAGAGCTAAGCACACACTGTTTATCAAGTttaatggtctgtcataatataatagagacaatagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatgtaatagagacaatagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagatggtagatctagctggtctgtcataatataatagagacagtagatctagctggtctatcatatttcAAAAGAgagggtagatctagctggtctgtcataaaataatagagacagtagatctaacaggGCTATCACATTACAATAGAGAgggtagatctaactggtctgtcataatataatagagtcagtagatctagctggtctcttataatacaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctaactggtctttcataatattattgagagagtagatctagctggtctgtcataatatgatagacagtagatctagctggtctgtcattatataaaagagacagtagatctagctggtctgtaatcaaataaatgagacagtagctcgagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatatagctggtctgtcatacaataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatacgataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatgtaacaaagacagtagatctagctggtctgtcataatgtaatagacacagtaggtctatctggtctgccataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattatataatagaaacagtagatctagctggtctgtaatcaaataaatgagacagtagatctagttggtctgtcataatataatagagacaggaaatctagttggtctgtcataatgtaacaaaggcagtagatctagccggtctgtcataatgtaatagagacagtaggtctagctggtctgtcatactgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctatctggtctgtgataatataatagagacagtagatctagctggcctgtcataatataatagagacagtagatctagctggtctgtcattatataatagagacagtagacctagctggtctgtaataatataaatgagacagtagatctagctggtctgtcataatataaatgagacagtagatctagctggtctgtcataatgtaaatgagacagtagatctagctggtatgtcattatataatagagacagtagatctagctggtctgtcattatataatagagacagtatatctagctggtctgtcataatgtaatagagacagaagatctagctggtctgtgataatgtgatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctgttctgtcatatagtaatagagacagtagatcgagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagttctagctggtctgtcataatgtaatagagacagtagatgtagctggtctgtcatactataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagatggtctgtcatacgataatagagacagtagatctaggtggtctgtcataatataatagagacagtagatctagctggtctgtcataatgtaatagacacagtagatctagctggtctgtcataatgtaatagacacagtaggtctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttattatataatagagacagtagatctagctggtctgtaatcatataaatgagacagtagatctagctgctctgtcattatataatagagacagtagatctagctggtctgtaatcatattaatgagacagtagatctagctggtctgtcataatataaatgagacagtagaactagctggtctgtcataatgtaatagaaccagtagatctagctggtctgtgataatataaatgagacagtagatctagctggtctgtcataatgtaacaaagacagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataaagtaatagagacagtagatctagctgatctgtaatcatataaatgagacagtagatctagctggtctgtcataatataaatgagacagtagaactagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagatagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagctggtctgtcataatgtaaatgagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcattatatactagagacagtatatctagctggtctgtcataatgtaatagagacagaagatctagctggtctgtgataatgtgatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctgttctgtcataatgtaatagagacagtagatgtagctggtctgtcatactataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagatggtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950568 lncRNA downstream 23130 6179763 ~ 6180160 (-) True G1703784
TU1950564 lncRNA downstream 28756 6173026 ~ 6174534 (-) True G1703780
TU1950557 lncRNA downstream 45872 6157109 ~ 6157418 (-) True G1703773
TU1950538 lncRNA downstream 75774 6127034 ~ 6127516 (-) True G1703756
TU1950529 lncRNA downstream 100738 6102200 ~ 6102552 (-) True G1703748
TU1950633 lncRNA upstream 1172 6228129 ~ 6228507 (-) True G1703805
TU1950641 lncRNA upstream 24378 6251335 ~ 6252327 (-) False G1703812
TU1950642 lncRNA upstream 24378 6251335 ~ 6252327 (-) False G1703812
TU1950643 lncRNA upstream 24378 6251335 ~ 6252327 (-) False G1703812
TU1950644 lncRNA upstream 24378 6251335 ~ 6252327 (-) False G1703812
XM_036956696.1 mRNA downstream 14480 6067135 ~ 6188810 (-) True LOC110499738
XM_036956697.1 mRNA downstream 16217 6067135 ~ 6187073 (-) False LOC110499738
XM_036956698.1 mRNA downstream 18624 6067135 ~ 6184666 (-) False LOC110499738
XM_036956694.1 mRNA downstream 20167 6067135 ~ 6183123 (-) False LOC110499738
XM_036956695.1 mRNA downstream 25676 6067135 ~ 6177614 (-) False LOC110499738
XR_005038446.1 mRNA upstream 290931 6517888 ~ 6518346 (-) False LOC118942797
XM_036956706.1 mRNA upstream 663566 6890523 ~ 6917536 (-) False LOC118942845
XM_036956707.1 mRNA upstream 663566 6890523 ~ 6917536 (-) True LOC118942845
XM_036956708.1 mRNA upstream 821939 7048896 ~ 7050907 (-) True LOC118942846
XM_036956709.1 mRNA upstream 1076648 7303605 ~ 7307397 (-) True LOC118942847
TU1950429 other downstream 206864 5991698 ~ 5996426 (-) True G1703669
TU1950464 other downstream 239867 5950034 ~ 5963423 (-) False LOC118942843
TU1950407 other downstream 303509 5899342 ~ 5899781 (-) True G1703658
TU1949828 other downstream 747179 5452948 ~ 5456111 (-) True LOC110491889
TU1949859 other downstream 773118 5429468 ~ 5430172 (-) True G1703323
TU1950752 other upstream 78596 6305553 ~ 6308220 (-) False G1703878
TU1950753 other upstream 78596 6305553 ~ 6308220 (-) False G1703878
TU1950755 other upstream 78596 6305553 ~ 6308220 (-) False G1703878
TU1950757 other upstream 78596 6305553 ~ 6308220 (-) True G1703878
TU1950779 other upstream 115784 6342741 ~ 6343182 (-) True G1703896

Expression Profile