RNA id: TU1950588


Basic Information

Item Value
RNA id TU1950588
length 2779
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G1703792
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6203291 ~ 6227144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccatctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatagtatgacagaccagctacatctactgtctctattacattatgacagaccagctagaactactgtctctattacattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattacattatgacagaccagctcgatctactgtctctattactatatgacagaacagctagatctactgtctctattacattatgacagaccagctagatctactgtctctatcacattatcacagaccagctagatcttctgtctctattacattatgacagaccagctagatatactgtctctagtatataatgacagaccagctagatctactgtctctattatataatgacagaccagctagatctactgtctcatttacataccgacagaccagctagatctactgtctcatttatattatgacagacaagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattatcacagaccagctagatctactgtctctattatattatgacagaccacctagaactactgtctctattatcgtatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatagtatgacagaccagctatatctactgtctctattacattatgacagaccagctagatctactgtctctattccattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattttgacagacaagctagatctactgtctctattatataatgacagaccatctagatctactgtctcatttatatgattacagaccagctagatctactgtctctattatataataacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattacattatgacagaccagctagttctactgtctcatttatattatgacagaccagctagatctactgtctcatttatatgattacagatcagctagatctactgtctctattactttatgacagaccagctagttctactgtctcatttatattatgacagaccagctagatctactgtctcatttatatgattacagaccagctagatctactgtctctattacattatgacagaccagctagacctactgtgtctattacattatgatagaccagcgagatctactgtctctatttatattatgtcagaccagctagacctactgtctctattttattatgacagaccagctagatctactgtctctattatattatgacagaccagctagacctactgtgtctattacattatgacagaccagctagatctactgtctctattatattatgacagaccacctagatctactgtctctattatcgtatgacagaccatctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatagtatgacagaccagctacatctactgtctctattacattatgacagaccagctagaactactgtctctattacattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattttgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattacattatgacagaccagctcgatctactgtctctattactatatgacagaacagctagatctactgtctctattacattatgacagaccagctagatctactgtctctatcacattatcacagaccagctagatcttctgtctctattacattatgacagaccagctagatatactgtctctagtatataatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattgtattataagagaccagctagatctactgactctattatattatgacagaccagttagatctacccTCTCTATTGTAATGTGATAGCcctgttagatctactgtctctattattttatgacagaccagctagatctaccctcTCTTTTGAAATATGATAGACcccctagatctactgtctctattatattatgacagaccagctagatctactgtctctattatattacgacagaccagctagatctattgtctctattacattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctattgtctctattatattatgacagaccattaaACTTGATAAACAGTGTGTGCTTAGCTCTGAATCTGTATGGTACTTCATTCCCTGTCATATATTTATAAAATGGGGTTATCTTCAATTTTTTGTGGATATGCAATTATTCTCCAGCAAAATTACCCATCAAACTTTCTGAGTTTCATGAACAAGTCCTTTTATCCTGGAAGCTATGTTAATGTCTACAACTTTTCAACCACACAAGACACTTCTGTGGAACAACAAAGATATtgttgttaaaaaaaaacaagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950571 lncRNA upstream 9760 6191930 ~ 6193531 (+) True G1703786
TU1950182 lncRNA upstream 34936 6167167 ~ 6168355 (+) True G1703537
TU1950170 lncRNA upstream 56893 6145532 ~ 6146398 (+) True G1703527
TU1950142 lncRNA upstream 134836 6067963 ~ 6068455 (+) True G1703503
TU1950141 lncRNA upstream 135053 6067963 ~ 6068238 (+) False G1703503
TU1950627 lncRNA downstream 26250 6253394 ~ 6253927 (+) True G1703799
TU1950677 lncRNA downstream 28768 6255912 ~ 6256569 (+) True G1703820
TU1950674 lncRNA downstream 37034 6264178 ~ 6322504 (+) True G1703817
TU1950684 lncRNA downstream 44609 6271753 ~ 6272269 (+) True G1703827
TU1950694 lncRNA downstream 62742 6289886 ~ 6290314 (+) True G1703835
XM_036956687.1 mRNA upstream 209501 5986775 ~ 5993790 (+) False LOC110527635
XM_036956688.1 mRNA upstream 209501 5986775 ~ 5993790 (+) True LOC110527635
XM_036956689.1 mRNA upstream 216650 5979407 ~ 5986641 (+) False LOC118942842
XM_036956489.1 mRNA downstream 937 6228081 ~ 6252333 (+) False mrps33
NM_001171863.1 mRNA downstream 1057 6228201 ~ 6251678 (+) False mrps33
XM_036956701.1 mRNA downstream 32669 6259813 ~ 6300981 (+) False LOC110500907
XM_036956699.1 mRNA downstream 32673 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA downstream 32675 6259819 ~ 6304321 (+) False LOC110500907
TU1950048 other upstream 208481 5983345 ~ 5994810 (+) True G1703427
TU1949988 other upstream 485590 5717199 ~ 5717701 (+) True G1703391
TU1949920 other upstream 606863 5585531 ~ 5596428 (+) True LOC110511233
TU1949137 other upstream 948406 5254165 ~ 5254885 (+) False G1702856
TU1950617 other downstream 970 6228114 ~ 6252320 (+) False mrps33
TU1950618 other downstream 970 6228114 ~ 6252320 (+) False mrps33
TU1950619 other downstream 970 6228114 ~ 6252320 (+) False mrps33
TU1950620 other downstream 970 6228114 ~ 6252320 (+) False mrps33
TU1950621 other downstream 970 6228114 ~ 6252320 (+) False mrps33

Expression Profile