RNA id: TU1950799


Basic Information

Item Value
RNA id TU1950799
length 444
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1703914
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6363718 ~ 6364161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaccattacaacctgctataaaccccaacatatcagagatttaccattacaacctgctataaaccccactagagacatctaactaacaacatatcagagatttaccattacaccctgctataaaccccactagagacatctaactaacaacatatcagagatttaccattacaacctgctataaaccccaacatatcagagatttaccattacaccctgctataaaccccaacatatcagagatttaccattacaccctgctataaaccccactagagacatctaactaacaacatatcagagatttaccattacaccctgctataaaccccactagagacatctaactaacaacatatcagagatttaccattacaccctgctataaaccccaacatatcagagatttaccattacaacctgctataaaccccactagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950778 lncRNA upstream 20048 6343466 ~ 6343670 (+) True G1703895
TU1950777 lncRNA upstream 20536 6342874 ~ 6343182 (+) True G1703894
TU1950776 lncRNA upstream 21093 6342331 ~ 6342625 (+) True G1703893
TU1950711 lncRNA upstream 24644 6336918 ~ 6339074 (+) True G1703849
TU1950710 lncRNA upstream 26201 6336918 ~ 6337517 (+) False G1703849
TU1950819 lncRNA downstream 21449 6385610 ~ 6386125 (+) True G1703931
TU1950831 lncRNA downstream 28140 6392301 ~ 6392503 (+) True G1703941
TU1950838 lncRNA downstream 31602 6395763 ~ 6396159 (+) True G1703946
TU1950846 lncRNA downstream 42795 6406956 ~ 6407199 (+) True G1703954
TU1950865 lncRNA downstream 58442 6422603 ~ 6422867 (+) True G1703970
XM_036956699.1 mRNA upstream 59397 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 59397 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 59397 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 62737 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 112040 6228201 ~ 6251678 (+) False mrps33
XM_036956703.1 mRNA downstream 348759 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA downstream 348759 6712920 ~ 6879729 (+) False LOC118942844
XR_005038485.1 mRNA downstream 348759 6712920 ~ 6879730 (+) False LOC118942844
XM_036956705.1 mRNA downstream 419183 6783344 ~ 6879727 (+) False LOC118942844
XM_036956716.1 mRNA downstream 1163366 7527527 ~ 7561975 (+) False LOC118942849
TU1950621 other upstream 111398 6228114 ~ 6252320 (+) False mrps33
TU1950845 other downstream 41871 6406032 ~ 6406773 (+) True G1703953
TU1951043 other downstream 439058 6803219 ~ 6804136 (+) False LOC118942844
TU1951195 other downstream 643008 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 785239 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 1163642 7527803 ~ 7545158 (+) False LOC118942849

Expression Profile