RNA id: TU1950952


Basic Information

Item Value
RNA id TU1950952
length 216
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1704034
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6559533 ~ 6562526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctatttctatgtctggcctgatatggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctatgtgttttcaccagatagggctgtttaggttttcgttacgttcatcacgttctttattttgtagtgtttgtactgattcgtgttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950924 lncRNA upstream 36188 6521724 ~ 6523345 (+) True G1704019
TU1950865 lncRNA upstream 136666 6422603 ~ 6422867 (+) True G1703970
TU1950846 lncRNA upstream 152334 6406956 ~ 6407199 (+) True G1703954
TU1950838 lncRNA upstream 163374 6395763 ~ 6396159 (+) True G1703946
TU1950831 lncRNA upstream 167030 6392301 ~ 6392503 (+) True G1703941
TU1950964 lncRNA downstream 13987 6576513 ~ 6576726 (+) True G1704046
TU1950980 lncRNA downstream 40795 6603321 ~ 6603555 (+) True G1704061
TU1950998 lncRNA downstream 70557 6633083 ~ 6634024 (+) True G1704075
TU1951010 lncRNA downstream 81675 6644201 ~ 6645201 (+) True G1704085
TU1951014 lncRNA downstream 83152 6645678 ~ 6649693 (+) True G1704086
XM_036956699.1 mRNA upstream 255212 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 255212 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 255212 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 258552 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 307855 6228201 ~ 6251678 (+) False mrps33
XM_036956703.1 mRNA downstream 150394 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA downstream 150394 6712920 ~ 6879729 (+) False LOC118942844
XR_005038485.1 mRNA downstream 150394 6712920 ~ 6879730 (+) False LOC118942844
XM_036956705.1 mRNA downstream 220818 6783344 ~ 6879727 (+) False LOC118942844
XM_036956716.1 mRNA downstream 965001 7527527 ~ 7561975 (+) False LOC118942849
TU1950845 other upstream 152760 6406032 ~ 6406773 (+) True G1703953
TU1950622 other upstream 307213 6228114 ~ 6252320 (+) False mrps33
TU1951043 other downstream 240693 6803219 ~ 6804136 (+) False LOC118942844
TU1951195 other downstream 444643 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 586874 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 965277 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 965408 7527934 ~ 7540650 (+) False LOC118942849

Expression Profile