RNA id: TU1950979


Basic Information

Item Value
RNA id TU1950979
length 1552
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1704060
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6601621 ~ 6603258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacaaattcttatttacaatgacggccttcagaaaggcaaaaggcctccagCAGGGACTGGGGCTGGATTAAAAATAACAACATAAATAAATAGATAGGactaaacacacatcacgacaagagagacaccacaacactacgtatagacaccacaacactacgtatagacaccacaacactacatatagacaccacaacactacatatagacaccacaacactacgtatagacaccacaacactacgtatagacaccacaacactacgtctagacaccacaacactatgtATAGAcaccacatcacgacaagagagacaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactacatatagacaccacaacactatatatagacaccacaacactacgtatagacaccacaacactacgtaTAGACaccacatcacaacaagagagacaccacatcacgacaagagagacaccacaacactacgtatagacaccacaacactacgtatagacaccacaacactacgtaTAGACaccacaacactacgtaTAGACaccacatcacaacaagagagacaccacaacactacgtaTAGAcaccacatcacgacaagagagacaccacagcactacatatagacaccacaacaATACGTATagacacacaacactacataaagacactacaccactacataaagagagacactacataaagagagatactacaacactacatagagagagacaacacaacactacatagagagagacaacacaacactacatagagagagacaacacaacactacatagagagagacaacacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactacatatagacaccacaacactacatatagacaccacaacactacataaagacaccacaacactacataaagagagacaccacaacactacgtatagacaccacaacactacgtatagacaccacaacactacataaagacaccacaacactacatatagacaccacaacactatatatagacaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactatttATAGACACCACAACGCTAtatatagacaccacaacactacatatagacaccacaacactatatatagacaccacaacactatatatagacaccacaacactacatataaacaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactatatatagaaaccacaacactacataaagagagacaccacaacactacatatagacaccacaacactacatatagacaccacaacactacataaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950976 lncRNA downstream 3555 6596306 ~ 6598066 (-) True G1704058
TU1950973 lncRNA downstream 10872 6590065 ~ 6590749 (-) True G1704055
TU1950963 lncRNA downstream 28078 6573303 ~ 6573543 (-) True G1704045
TU1950959 lncRNA downstream 32317 6568939 ~ 6569304 (-) True G1704041
TU1950953 lncRNA downstream 38845 6559337 ~ 6562776 (-) True G1704035
TU1950981 lncRNA upstream 1468 6604726 ~ 6605067 (-) True G1704062
TU1951004 lncRNA upstream 32266 6635524 ~ 6635904 (-) True G1704080
TU1951005 lncRNA upstream 37775 6641033 ~ 6641712 (-) True G1704081
TU1951029 lncRNA upstream 51229 6654487 ~ 6702083 (-) True G1704097
TU1951217 lncRNA upstream 142518 6745776 ~ 6746402 (-) True G1704250
XR_005038446.1 mRNA downstream 83275 6517888 ~ 6518346 (-) False LOC118942797
XM_036956696.1 mRNA downstream 412811 6067135 ~ 6188810 (-) True LOC110499738
XM_036956697.1 mRNA downstream 414548 6067135 ~ 6187073 (-) False LOC110499738
XM_036956698.1 mRNA downstream 416955 6067135 ~ 6184666 (-) False LOC110499738
XM_036956694.1 mRNA downstream 418498 6067135 ~ 6183123 (-) False LOC110499738
XM_036956706.1 mRNA upstream 287265 6890523 ~ 6917536 (-) False LOC118942845
XM_036956707.1 mRNA upstream 287265 6890523 ~ 6917536 (-) True LOC118942845
XM_036956708.1 mRNA upstream 445638 7048896 ~ 7050907 (-) True LOC118942846
XM_036956709.1 mRNA upstream 700347 7303605 ~ 7307397 (-) True LOC118942847
XM_036956710.1 mRNA upstream 777321 7380579 ~ 7384439 (-) False LOC118942848
TU1950779 other downstream 258439 6342741 ~ 6343182 (-) True G1703896
TU1950752 other downstream 293401 6305553 ~ 6308220 (-) False G1703878
TU1951030 other upstream 97640 6700898 ~ 6705845 (-) True G1704098
TU1951410 other upstream 546307 7149565 ~ 7149979 (-) True G1704410
TU1951412 other upstream 553432 7156690 ~ 7157057 (-) True G1704412
TU1951804 other upstream 694667 7297925 ~ 7299086 (-) True G1704702
TU1951802 other upstream 695942 7299200 ~ 7301845 (-) True G1704700

Expression Profile