RNA id: TU1951004


Basic Information

Item Value
RNA id TU1951004
length 381
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1704080
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6635524 ~ 6635904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttaaccaacaggtgtagatagacctcacagtgaaatgctgactgaccagcccttaaccaacaggtgtagatagacctcacagtgaaatgctgactgaccagcccttaaccaacaggtgtagatagacctcacagtgaaatgctgactgaccagcccttaaccaacaggtgtagacctcacagtgaaacgctgactgaccagcccttaaccaacaggtgtagatagacctcacagtgaaatgctgactgaccagcccttaaccaacaggtgtagatagacctcacagtgaaatgctgactgaccagcccttaaccaacaggtgtagatagacctcacagtgaaatgctgactgaccagcccttaaccaacaggtgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1950981 lncRNA downstream 30457 6604726 ~ 6605067 (-) True G1704062
TU1950979 lncRNA downstream 32266 6601621 ~ 6603258 (-) True G1704060
TU1950976 lncRNA downstream 37458 6596306 ~ 6598066 (-) True G1704058
TU1950973 lncRNA downstream 44775 6590065 ~ 6590749 (-) True G1704055
TU1950963 lncRNA downstream 61981 6573303 ~ 6573543 (-) True G1704045
TU1951005 lncRNA upstream 5129 6641033 ~ 6641712 (-) True G1704081
TU1951029 lncRNA upstream 18583 6654487 ~ 6702083 (-) True G1704097
TU1951217 lncRNA upstream 109872 6745776 ~ 6746402 (-) True G1704250
TU1951221 lncRNA upstream 116844 6752748 ~ 6753031 (-) True G1704254
TU1951241 lncRNA upstream 168646 6804550 ~ 6804822 (-) True G1704274
XR_005038446.1 mRNA downstream 117178 6517888 ~ 6518346 (-) False LOC118942797
XM_036956696.1 mRNA downstream 446714 6067135 ~ 6188810 (-) True LOC110499738
XM_036956697.1 mRNA downstream 448451 6067135 ~ 6187073 (-) False LOC110499738
XM_036956698.1 mRNA downstream 450858 6067135 ~ 6184666 (-) False LOC110499738
XM_036956694.1 mRNA downstream 452401 6067135 ~ 6183123 (-) False LOC110499738
XM_036956706.1 mRNA upstream 254619 6890523 ~ 6917536 (-) False LOC118942845
XM_036956707.1 mRNA upstream 254619 6890523 ~ 6917536 (-) True LOC118942845
XM_036956708.1 mRNA upstream 412992 7048896 ~ 7050907 (-) True LOC118942846
XM_036956709.1 mRNA upstream 667701 7303605 ~ 7307397 (-) True LOC118942847
XM_036956710.1 mRNA upstream 744675 7380579 ~ 7384439 (-) False LOC118942848
TU1950779 other downstream 292342 6342741 ~ 6343182 (-) True G1703896
TU1950752 other downstream 327304 6305553 ~ 6308220 (-) False G1703878
TU1951030 other upstream 64994 6700898 ~ 6705845 (-) True G1704098
TU1951410 other upstream 513661 7149565 ~ 7149979 (-) True G1704410
TU1951412 other upstream 520786 7156690 ~ 7157057 (-) True G1704412
TU1951804 other upstream 662021 7297925 ~ 7299086 (-) True G1704702
TU1951802 other upstream 663296 7299200 ~ 7301845 (-) True G1704700

Expression Profile