RNA id: TU1951014


Basic Information

Item Value
RNA id TU1951014
length 355
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1704086
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6645678 ~ 6649693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatagagtctgacaacaataaaaccctgatgaagaccaggcagtggtggtatagagtctgacaacaataaaaccctgatgaagaccaggcagtggtggtatagagtctgacaacaataaaaccctgatgaagacaataaaaccctgatgaagaccagacagtggtggtatagagtctgacaacaataaaaccctgatgaagacaataaaaccctgatgaagacaataaaaccctgatgaagaccagacagtggtggtatagagtctgacaacaataaaaccctgatgaagaccaggcagtggtggtatagagtctgacaacaataaaaccctgatgaagacccggcagtggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951010 lncRNA upstream 477 6644201 ~ 6645201 (+) True G1704085
TU1950998 lncRNA upstream 11654 6633083 ~ 6634024 (+) True G1704075
TU1950980 lncRNA upstream 42123 6603321 ~ 6603555 (+) True G1704061
TU1950964 lncRNA upstream 68952 6576513 ~ 6576726 (+) True G1704046
TU1950952 lncRNA upstream 83152 6559533 ~ 6562526 (+) True G1704034
TU1951017 lncRNA downstream 5719 6655412 ~ 6701167 (+) True G1704087
TU1951018 lncRNA downstream 9329 6659022 ~ 6660745 (+) True G1704088
TU1951035 lncRNA downstream 57684 6707377 ~ 6707659 (+) True G1704102
TU1951048 lncRNA downstream 68454 6718147 ~ 6718483 (+) True G1704108
TU1951070 lncRNA downstream 89476 6739169 ~ 6739486 (+) False G1704128
XM_036956699.1 mRNA upstream 341357 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 341357 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 341357 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 344697 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 394000 6228201 ~ 6251678 (+) False mrps33
XM_036956703.1 mRNA downstream 63227 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA downstream 63227 6712920 ~ 6879729 (+) False LOC118942844
XR_005038485.1 mRNA downstream 63227 6712920 ~ 6879730 (+) False LOC118942844
XM_036956705.1 mRNA downstream 133651 6783344 ~ 6879727 (+) False LOC118942844
XM_036956716.1 mRNA downstream 877834 7527527 ~ 7561975 (+) False LOC118942849
TU1950845 other upstream 238905 6406032 ~ 6406773 (+) True G1703953
TU1950622 other upstream 393358 6228114 ~ 6252320 (+) False mrps33
TU1951043 other downstream 153526 6803219 ~ 6804136 (+) False LOC118942844
TU1951195 other downstream 357476 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 499707 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 878110 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 878241 7527934 ~ 7540650 (+) False LOC118942849

Expression Profile