RNA id: TU1951048


Basic Information

Item Value
RNA id TU1951048
length 296
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1704108
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6718147 ~ 6718483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctggctgaactgcctgtctgtgttGTTCAGTTAGACAGGAGGTAATGTAGTAGTTGAACAAGGACACTGTTAGACAGGAGGTAATTTAGTAGTTTAACAAGGAGACAATGTTAGACAGGAGGTAATGTAGTAGTTGAACAAGGAGACACTGTGAGACAGGAGGTAATGTAGTAGTTGAACAAGGAGACACTGTTTGACAGGAGGTAATGTAGTGGTTGAACAAGGAGACACTGTTTGACAGGAGGTAATGTAGTAGTTGAACAAGGAGACACTGTATAACGCATAATTATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951035 lncRNA upstream 10488 6707377 ~ 6707659 (+) True G1704102
TU1951017 lncRNA upstream 16980 6655412 ~ 6701167 (+) True G1704087
TU1951018 lncRNA upstream 57402 6659022 ~ 6660745 (+) True G1704088
TU1951014 lncRNA upstream 68454 6645678 ~ 6649693 (+) True G1704086
TU1951010 lncRNA upstream 72946 6644201 ~ 6645201 (+) True G1704085
TU1951070 lncRNA downstream 20686 6739169 ~ 6739486 (+) False G1704128
TU1951071 lncRNA downstream 20686 6739169 ~ 6739486 (+) True G1704128
TU1951087 lncRNA downstream 46993 6765476 ~ 6766880 (+) True G1704140
TU1951092 lncRNA downstream 55337 6773820 ~ 6774381 (+) True G1704145
TU1951098 lncRNA downstream 76027 6794510 ~ 6794723 (+) True G1704150
XM_036956699.1 mRNA upstream 413826 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 413826 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 413826 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 417166 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 466469 6228201 ~ 6251678 (+) False mrps33
XM_036956705.1 mRNA downstream 64861 6783344 ~ 6879727 (+) False LOC118942844
XM_036956716.1 mRNA downstream 809044 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 809051 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 809073 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 809562 7528045 ~ 7561975 (+) False LOC118942849
TU1950845 other upstream 311374 6406032 ~ 6406773 (+) True G1703953
TU1950622 other upstream 465827 6228114 ~ 6252320 (+) False mrps33
TU1951043 other downstream 84736 6803219 ~ 6804136 (+) False LOC118942844
TU1951195 other downstream 288686 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 430917 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 809320 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 809451 7527934 ~ 7540650 (+) False LOC118942849

Expression Profile