RNA id: TU1951098


Basic Information

Item Value
RNA id TU1951098
length 214
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1704150
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6794510 ~ 6794723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taagaacagaatacatttctaaacacttctacctTAACTACAGGATGGGTGTCCCTAAACCGGTGCGGTTGTTGCTAACGTCACTAGAATGACGTTGTaaacaacagccaactttccgggacatagacatgtctcatacgggcagaaagcttaacattcttgttaatctaactgcactgtccaatttacagtagctattacagtgaacaaATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951092 lncRNA upstream 20129 6773820 ~ 6774381 (+) True G1704145
TU1951087 lncRNA upstream 27630 6765476 ~ 6766880 (+) True G1704140
TU1951070 lncRNA upstream 55024 6739169 ~ 6739486 (+) False G1704128
TU1951071 lncRNA upstream 55024 6739169 ~ 6739486 (+) True G1704128
TU1951048 lncRNA upstream 76027 6718147 ~ 6718483 (+) True G1704108
TU1951104 lncRNA downstream 10929 6805652 ~ 6805910 (+) True G1704155
TU1951105 lncRNA downstream 12984 6807707 ~ 6807935 (+) True G1704156
TU1951106 lncRNA downstream 20804 6815527 ~ 6815929 (+) True G1704157
TU1951108 lncRNA downstream 28258 6822981 ~ 6823206 (+) True G1704159
TU1951040 lncRNA downstream 31644 6826367 ~ 6835079 (+) True LOC118942844
XM_036956699.1 mRNA upstream 490189 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 490189 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 490189 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 493529 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 542832 6228201 ~ 6251678 (+) False mrps33
XM_036956716.1 mRNA downstream 732804 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 732811 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 732833 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 733322 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 733477 7528200 ~ 7561975 (+) False LOC118942849
TU1950845 other upstream 387737 6406032 ~ 6406773 (+) True G1703953
TU1950622 other upstream 542190 6228114 ~ 6252320 (+) False mrps33
TU1951043 other downstream 8496 6803219 ~ 6804136 (+) False LOC118942844
TU1951195 other downstream 212446 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 354677 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 733080 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 733211 7527934 ~ 7540650 (+) False LOC118942849

Expression Profile