RNA id: TU1951106


Basic Information

Item Value
RNA id TU1951106
length 403
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1704157
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6815527 ~ 6815929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAGATGGTTTCTgggaacaagtgaaggaagctgtagatggtggacatggtggtggtttctgggaacaagtgaaggaagctgtagatggaggacatggtggtggtttctgtgaacaagtgaaggaagctgtagatggtggtggtttctgggaacaagtgaaggaagctgtagatggaggacatggtggtggtttctgtgaacaagtgaaggaagctgtagatggtggtggtttctgggaacaagtgaaggaagctgtagatggtggacatggtggtggtttctgggaacaagtgaaggaagctgtagatggaggacatggtggtggtttctgtgaacaagtgaaggaagctgtagatggtggcggtttctgggaacaagtgaaggaagctgtagatggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951105 lncRNA upstream 7592 6807707 ~ 6807935 (+) True G1704156
TU1951104 lncRNA upstream 9617 6805652 ~ 6805910 (+) True G1704155
TU1951098 lncRNA upstream 20804 6794510 ~ 6794723 (+) True G1704150
TU1951092 lncRNA upstream 41146 6773820 ~ 6774381 (+) True G1704145
TU1951087 lncRNA upstream 48647 6765476 ~ 6766880 (+) True G1704140
TU1951108 lncRNA downstream 7052 6822981 ~ 6823206 (+) True G1704159
TU1951040 lncRNA downstream 10438 6826367 ~ 6835079 (+) True LOC118942844
TU1951111 lncRNA downstream 10629 6826558 ~ 6827097 (+) True G1704162
TU1951114 lncRNA downstream 22807 6838736 ~ 6839127 (+) True G1704164
TU1951119 lncRNA downstream 34374 6850303 ~ 6909159 (+) True G1704168
XM_036956699.1 mRNA upstream 511206 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 511206 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 511206 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 514546 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 563849 6228201 ~ 6251678 (+) False mrps33
XM_036956716.1 mRNA downstream 711598 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 711605 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 711627 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 712116 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 712271 7528200 ~ 7561975 (+) False LOC118942849
TU1951043 other upstream 11391 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 408754 6406032 ~ 6406773 (+) True G1703953
TU1950624 other upstream 563207 6228114 ~ 6252320 (+) False mrps33
TU1951195 other downstream 191240 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 333471 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 711874 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 712005 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 712005 7527934 ~ 7545158 (+) False LOC118942849

Expression Profile