RNA id: TU1951119


Basic Information

Item Value
RNA id TU1951119
length 520
lncRNA type read_through
GC content 0.44
exon number 2
gene id G1704168
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6850303 ~ 6909159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagagagatagatagggatgggagagagagagggttatggggagagagagggttatggggagagagagatcatagcTGTTTTATGGAGGTTCTACATTAATTTGGTGAAATGAGTCCCTTTTTTAAACCCCTCTCCATGGTCAGAGGTGCACCTCAGTGCCCCCGGCTATAAATCCCCTCGTGCTGAATCCTTGATCCCCAGCCACAGGCCAGGAGAGCACTAACTCAACGCACTACGGACAGTTAAAACATCTCAACGGAGACAGGACATCTAATAGAAGCAACCTGCCAAGGCTGAAATTCTGACAGATTGTTCATTCAAAAATATGACTTCAGTTTCATTTGAATTTTGGGGAGTAGCTTCAACTGAGACTTAAGGCGGGGACAGAATAGTCCCTTGAGAAGTATCTTCTGTTGTCACTCATTCTGTCAGTAAATTAGTCTATAATCAGACTGTCTATAGGTTGGTCTATAATCAGACTGTCTATAGGTTGGTCTATAATCAGACTGTCTATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951114 lncRNA upstream 11176 6838736 ~ 6839127 (+) True G1704164
TU1951040 lncRNA upstream 15224 6826367 ~ 6835079 (+) True LOC118942844
TU1951111 lncRNA upstream 23206 6826558 ~ 6827097 (+) True G1704162
TU1951108 lncRNA upstream 27097 6822981 ~ 6823206 (+) True G1704159
TU1951106 lncRNA upstream 34374 6815527 ~ 6815929 (+) True G1704157
TU1951151 lncRNA downstream 89 6909248 ~ 6909558 (+) True G1704194
TU1951152 lncRNA downstream 791 6909950 ~ 6910336 (+) True G1704195
TU1951161 lncRNA downstream 14957 6924116 ~ 6924914 (+) True G1704203
TU1951167 lncRNA downstream 25686 6934845 ~ 6935287 (+) False G1704208
TU1951168 lncRNA downstream 25686 6934845 ~ 6935287 (+) False G1704208
XM_036956699.1 mRNA upstream 545982 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 545982 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 545982 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 549322 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 598625 6228201 ~ 6251678 (+) False mrps33
XM_036956716.1 mRNA downstream 618368 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 618375 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 618397 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 618886 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 619041 7528200 ~ 7561975 (+) False LOC118942849
TU1951043 other upstream 46167 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 443530 6406032 ~ 6406773 (+) True G1703953
TU1950624 other upstream 597983 6228114 ~ 6252320 (+) False mrps33
TU1951195 other downstream 98010 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 240241 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 618644 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 618775 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 618775 7527934 ~ 7545158 (+) False LOC118942849

Expression Profile