RNA id: TU1951127


Basic Information

Item Value
RNA id TU1951127
length 228
lncRNA type intronic
GC content 0.50
exon number 3
gene id G1704176
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6867935 ~ 6868780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCCTGTAGCTCTGTCAGGTAGCTCTGTGAGCTGAAGACCACATGGGAGTCTTTACCCTGTAGCCCTGTCAGTTAGCTCTGGGGGCTGAAAACCACATGCCATCCTGCTGATATTAGCCTCCAGTCATCCATCCTATTGATTTGGAACACATGGAACACTGAGGCCCGTATGGACCCTTTCTAGAACACAGGGAACACTGAGGTCCATATAGacccattctagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951114 lncRNA upstream 28808 6838736 ~ 6839127 (+) True G1704164
TU1951040 lncRNA upstream 32856 6826367 ~ 6835079 (+) True LOC118942844
TU1951111 lncRNA upstream 40838 6826558 ~ 6827097 (+) True G1704162
TU1951108 lncRNA upstream 44729 6822981 ~ 6823206 (+) True G1704159
TU1951106 lncRNA upstream 52006 6815527 ~ 6815929 (+) True G1704157
TU1951128 lncRNA downstream 5104 6873884 ~ 6874422 (+) True G1704177
TU1951130 lncRNA downstream 12453 6881233 ~ 6937400 (+) True G1704178
TU1951135 lncRNA downstream 21915 6890695 ~ 6891610 (+) True G1704183
TU1951151 lncRNA downstream 40468 6909248 ~ 6909558 (+) True G1704194
TU1951152 lncRNA downstream 41170 6909950 ~ 6910336 (+) True G1704195
XM_036956699.1 mRNA upstream 563614 6259817 ~ 6304321 (+) False LOC110500907
XM_036956700.1 mRNA upstream 563614 6259819 ~ 6304321 (+) False LOC110500907
XM_036956702.1 mRNA upstream 563614 6266736 ~ 6304321 (+) True LOC110500907
XM_036956701.1 mRNA upstream 566954 6259813 ~ 6300981 (+) False LOC110500907
NM_001171863.1 mRNA upstream 616257 6228201 ~ 6251678 (+) False mrps33
XM_036956716.1 mRNA downstream 658747 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 658754 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 658776 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 659265 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 659420 7528200 ~ 7561975 (+) False LOC118942849
TU1951043 other upstream 63799 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 461162 6406032 ~ 6406773 (+) True G1703953
TU1950624 other upstream 615615 6228114 ~ 6252320 (+) False mrps33
TU1951195 other downstream 138389 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 280620 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 659023 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 659154 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 659154 7527934 ~ 7545158 (+) False LOC118942849

Expression Profile