RNA id: TU1951152


Basic Information

Item Value
RNA id TU1951152
length 279
lncRNA type intronic
GC content 0.44
exon number 3
gene id G1704195
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6909950 ~ 6910336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATCTGACTGTCTATAGGTTGGTCTATAATCAGACTGTCTATAGGTTGGTCTATAATCAGACTGTCTATAGGTTGGTCTATAAACAGACTGTCTATAGGTTGGTCTATAATCAGACTGTCTATAGGTTGGTCTATAATCAGACTGTCACAGATGAAGCCCTACTCCTAGACAACATGCTTTTCAGTCTAAAACATGGGTCCATCTACATCCGGGAAACCAGcccaaagagagagtgagtgccTGCCCCATGACCCACCCTGCCAGGGTTTCTGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951151 lncRNA upstream 392 6909248 ~ 6909558 (+) True G1704194
TU1951119 lncRNA upstream 791 6850303 ~ 6909159 (+) True G1704168
TU1951135 lncRNA upstream 18340 6890695 ~ 6891610 (+) True G1704183
TU1951128 lncRNA upstream 35528 6873884 ~ 6874422 (+) True G1704177
TU1951127 lncRNA upstream 41170 6867935 ~ 6868780 (+) True G1704176
TU1951161 lncRNA downstream 13780 6924116 ~ 6924914 (+) True G1704203
TU1951167 lncRNA downstream 24509 6934845 ~ 6935287 (+) False G1704208
TU1951168 lncRNA downstream 24509 6934845 ~ 6935287 (+) False G1704208
TU1951169 lncRNA downstream 24509 6934845 ~ 6935287 (+) False G1704208
TU1951170 lncRNA downstream 24509 6934845 ~ 6935287 (+) True G1704208
XR_005038485.1 mRNA upstream 30220 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 30221 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 30221 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 30223 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 605629 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 617191 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 617198 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 617220 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 617709 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 617864 7528200 ~ 7561975 (+) False LOC118942849
TU1951043 other upstream 105814 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 503177 6406032 ~ 6406773 (+) True G1703953
TU1950624 other upstream 657630 6228114 ~ 6252320 (+) False mrps33
TU1951195 other downstream 96833 7007169 ~ 7007740 (+) True G1704232
TU1951409 other downstream 239064 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 617467 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 617598 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 617598 7527934 ~ 7545158 (+) False LOC118942849

Expression Profile