RNA id: TU1951199


Basic Information

Item Value
RNA id TU1951199
length 239
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1704236
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7022354 ~ 7025478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttagtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtctatgtgtttttcaccagataggctgttttaggttttcgttacgttcatcacgttctttattttgtagtgtttgcattgattcgtgttttacgtttgtttcattaaaacatggatcgcaatctacacgctgcattttggtccgatccttgttctacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951194 lncRNA upstream 16227 7005921 ~ 7006127 (+) True G1704231
TU1951191 lncRNA upstream 21591 7000564 ~ 7000763 (+) True G1704228
TU1951189 lncRNA upstream 24975 6997172 ~ 6997379 (+) True G1704226
TU1951185 lncRNA upstream 39200 6982864 ~ 6983154 (+) True G1704222
TU1951184 lncRNA upstream 42380 6979472 ~ 6979974 (+) True G1704221
TU1951349 lncRNA downstream 26785 7052263 ~ 7052466 (+) True G1704353
TU1951350 lncRNA downstream 38099 7063577 ~ 7063915 (+) True G1704354
TU1951371 lncRNA downstream 58055 7083533 ~ 7083791 (+) True G1704374
TU1951408 lncRNA downstream 114356 7139834 ~ 7146046 (+) True G1704408
TU1951411 lncRNA downstream 130396 7155874 ~ 7156183 (+) True G1704411
XR_005038485.1 mRNA upstream 142624 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 142625 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 142625 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 142627 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 718033 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 502049 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 502056 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 502078 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 502567 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 502722 7528200 ~ 7561975 (+) False LOC118942849
TU1951195 other upstream 14614 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 218218 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 615581 6406032 ~ 6406773 (+) True G1703953
TU1950624 other upstream 770034 6228114 ~ 6252320 (+) False mrps33
TU1951409 other downstream 123922 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 502325 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 502456 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 502456 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 502456 7527934 ~ 7545844 (+) False LOC118942849

Expression Profile