RNA id: TU1951401


Basic Information

Item Value
RNA id TU1951401
length 548
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1704402
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7125601 ~ 7127443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTGTACTTTTTTTAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGACCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATGGAGTGCTGTGACTCCCCTGTCATCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATGGAGTGCTGTGACCCCCCTGTCATCCATAATGTCCCAGTGTGAGATATAGGATACATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTTAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATGGAGTGCTGTGACCCCCCCTGTCATCCATAATGTCCCAGTGTGAGATATAGGATCCATAATGTCCCAGTGTGAGATATAGGATGGAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951390 lncRNA downstream 20831 7104278 ~ 7104770 (-) True G1704391
TU1951386 lncRNA downstream 25296 7100056 ~ 7100305 (-) True G1704387
TU1951384 lncRNA downstream 26266 7099133 ~ 7099335 (-) True G1704385
TU1951383 lncRNA downstream 27190 7098181 ~ 7098411 (-) True G1704384
TU1951376 lncRNA downstream 34126 7088765 ~ 7091475 (-) False G1704379
TU1951406 lncRNA upstream 2623 7130066 ~ 7130310 (-) True G1704406
TU1951407 lncRNA upstream 3216 7130659 ~ 7130890 (-) True G1704407
TU1951416 lncRNA upstream 108617 7236060 ~ 7236306 (-) True G1704416
TU1951428 lncRNA upstream 121324 7248767 ~ 7248980 (-) True G1704428
TU1951437 lncRNA upstream 136308 7263751 ~ 7264095 (-) True G1704435
XM_036956708.1 mRNA downstream 74694 7048896 ~ 7050907 (-) True LOC118942846
XM_036956706.1 mRNA downstream 208065 6890523 ~ 6917536 (-) False LOC118942845
XM_036956707.1 mRNA downstream 208065 6890523 ~ 6917536 (-) True LOC118942845
XR_005038446.1 mRNA downstream 607255 6517888 ~ 6518346 (-) False LOC118942797
XM_036956696.1 mRNA downstream 936791 6067135 ~ 6188810 (-) True LOC110499738
XM_036956709.1 mRNA upstream 176162 7303605 ~ 7307397 (-) True LOC118942847
XM_036956710.1 mRNA upstream 253136 7380579 ~ 7384439 (-) False LOC118942848
XM_036956721.1 mRNA upstream 463085 7590528 ~ 7679878 (-) False LOC118936572
XM_036956718.1 mRNA upstream 463085 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA upstream 463085 7590528 ~ 7768302 (-) False LOC118936572
TU1951030 other downstream 419756 6700898 ~ 6705845 (-) True G1704098
TU1950779 other downstream 782419 6342741 ~ 6343182 (-) True G1703896
TU1950753 other downstream 817381 6305553 ~ 6308220 (-) False G1703878
TU1951410 other upstream 22122 7149565 ~ 7149979 (-) True G1704410
TU1951412 other upstream 29247 7156690 ~ 7157057 (-) True G1704412
TU1951804 other upstream 170482 7297925 ~ 7299086 (-) True G1704702
TU1951802 other upstream 171757 7299200 ~ 7301845 (-) True G1704700
TU1951838 other upstream 238104 7365547 ~ 7366140 (-) True G1704726

Expression Profile