RNA id: TU1951408


Basic Information

Item Value
RNA id TU1951408
length 246
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G1704408
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7139834 ~ 7146046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcatgtgaccaccccgttgatgctgagaacccagcacattccgatagggaatcatgtgaccacccggtagattctgagaacccagcacattctgatagggaatcatgtgaccacccggttgattctgagaacccagcacattctgatagggaatcatgtgaccacccggttgattctgagaacccagcacattccgacagggaatcatgggaccacccggttgattctgagaacccagcacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951371 lncRNA upstream 56043 7083533 ~ 7083791 (+) True G1704374
TU1951350 lncRNA upstream 75919 7063577 ~ 7063915 (+) True G1704354
TU1951349 lncRNA upstream 87368 7052263 ~ 7052466 (+) True G1704353
TU1951199 lncRNA upstream 114356 7022354 ~ 7025478 (+) True G1704236
TU1951194 lncRNA upstream 133707 7005921 ~ 7006127 (+) True G1704231
TU1951411 lncRNA downstream 9828 7155874 ~ 7156183 (+) True G1704411
TU1951413 lncRNA downstream 20612 7166658 ~ 7166859 (+) True G1704413
TU1951414 lncRNA downstream 73310 7219356 ~ 7219786 (+) True G1704414
TU1951415 lncRNA downstream 86314 7232360 ~ 7232590 (+) True G1704415
TU1951419 lncRNA downstream 93548 7239594 ~ 7239827 (+) True G1704419
XR_005038485.1 mRNA upstream 260104 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 260105 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 260105 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 260107 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 835513 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 381481 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 381488 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 381510 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 381999 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 382154 7528200 ~ 7561975 (+) False LOC118942849
TU1951195 other upstream 132094 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 335698 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 733061 6406032 ~ 6406773 (+) True G1703953
TU1950625 other upstream 887514 6228114 ~ 6252320 (+) False mrps33
TU1951409 other downstream 3354 7149400 ~ 7149993 (+) True G1704409
TU1951575 other downstream 381757 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 381888 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 381888 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 381888 7527934 ~ 7545844 (+) False LOC118942849

Expression Profile