RNA id: TU1951409


Basic Information

Item Value
RNA id TU1951409
length 594
RNA type TUCP
GC content 0.51
exon number 1
gene id G1704409
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7149400 ~ 7149993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccagcacattctgatagggaatcatgtgaccgcctcgttgattctgagaacccagcacattccggtagggaatcatgtgaccacccggttgattgtgagaacccagcacattcggctagggaatcatgtgaccacccggttgattctgagaacccagcacattccgacagggaatcatgggaccacccggttgattctgagaacccagcacatgtggatagggaatcatgtgaccacccggttgattctgagaacccagcacattcggatagggaatcatgtgaccacccggttgattctgagaacccagcacattctgatagggaatcatgtgaccgcctcgttgattctgagaacccagcacattccgatagggaatcatgtgaccacccggttgattctgagaacccagcacatgtggatagggaatcatgtgaccaccccgttgattctgagaacccagcacattccgatagggaatcatgggaccacccggttgattctgagaatccagcacattccgatagggaatcatgggaccacccggttgattctgagaacccagcacattctgatagggaatcatgtgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951408 lncRNA upstream 3354 7139834 ~ 7146046 (+) True G1704408
TU1951371 lncRNA upstream 65609 7083533 ~ 7083791 (+) True G1704374
TU1951350 lncRNA upstream 85485 7063577 ~ 7063915 (+) True G1704354
TU1951349 lncRNA upstream 96934 7052263 ~ 7052466 (+) True G1704353
TU1951199 lncRNA upstream 123922 7022354 ~ 7025478 (+) True G1704236
TU1951411 lncRNA downstream 5881 7155874 ~ 7156183 (+) True G1704411
TU1951413 lncRNA downstream 16665 7166658 ~ 7166859 (+) True G1704413
TU1951414 lncRNA downstream 69363 7219356 ~ 7219786 (+) True G1704414
TU1951415 lncRNA downstream 82367 7232360 ~ 7232590 (+) True G1704415
TU1951419 lncRNA downstream 89601 7239594 ~ 7239827 (+) True G1704419
XR_005038485.1 mRNA upstream 269670 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 269671 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 269671 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 269673 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 845079 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 377534 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 377541 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 377563 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 378052 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 378207 7528200 ~ 7561975 (+) False LOC118942849
TU1951195 other upstream 141660 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 345264 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 742627 6406032 ~ 6406773 (+) True G1703953
TU1950624 other upstream 897080 6228114 ~ 6252320 (+) False mrps33
TU1951575 other downstream 377810 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 377941 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 377941 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 377941 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 507436 7657429 ~ 7657869 (+) True G1704562

Expression Profile