RNA id: TU1951414


Basic Information

Item Value
RNA id TU1951414
length 431
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1704414
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7219356 ~ 7219786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgattctgagaacccagcacattccgatagggaatcatgggaccacccggttgattctgagaatccagcacattccgatagggaatcatgtgaccacccggttgattctgagaacccagcacatttcgatagggaatcatgtgaccacccggttgattctgagaacccagcacattccgatagggaatcatgttaccacccggttgattctgagaacccagcacattctgatagggaatcatgttaccgcctcgttgattctgagaacccagcacatttcgatagggaatcatgtgaccacccggttgattctgagaacccagcacattccgatagggaatcatgtgaccaccctgttgattcggagaacccagcacattccgatagggaatcatgtgaccacccggttgattctgagaacccagcacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951413 lncRNA upstream 52497 7166658 ~ 7166859 (+) True G1704413
TU1951411 lncRNA upstream 63173 7155874 ~ 7156183 (+) True G1704411
TU1951408 lncRNA upstream 73310 7139834 ~ 7146046 (+) True G1704408
TU1951371 lncRNA upstream 135565 7083533 ~ 7083791 (+) True G1704374
TU1951350 lncRNA upstream 155441 7063577 ~ 7063915 (+) True G1704354
TU1951415 lncRNA downstream 12574 7232360 ~ 7232590 (+) True G1704415
TU1951419 lncRNA downstream 19808 7239594 ~ 7239827 (+) True G1704419
TU1951420 lncRNA downstream 20777 7240563 ~ 7240867 (+) True G1704420
TU1951423 lncRNA downstream 21783 7241569 ~ 7242363 (+) True G1704423
TU1951426 lncRNA downstream 26998 7246784 ~ 7247141 (+) True G1704426
XR_005038485.1 mRNA upstream 339626 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 339627 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 339627 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 339629 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 915035 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 307741 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 307748 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 307770 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 308259 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 308414 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 69363 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 211616 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 415220 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 812583 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 967036 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 308017 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 308148 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 308148 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 308148 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 437643 7657429 ~ 7657869 (+) True G1704562

Expression Profile