RNA id: TU1951426


Basic Information

Item Value
RNA id TU1951426
length 305
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1704426
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7246784 ~ 7247141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATTGTAATGGCGAGAGGtcagcatgtcttggaggtatgctaacctcccctgttattggaatggtgagaggttagcatgtcttggaggtatgctaacctcccctgttattggaatggtgagaggttagcatgtcttggaggtatgatgtTTGTAGGTCTGTAATTTTCTCATCCATAATTATTCactattcattcaggactatccagAATCATTGTAgcgtccacattaatgtagaagtgtttacgATCCCATTCTACTCTTATTTACAAtagaagtgactccaaaatgacacaatacacaTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951423 lncRNA upstream 4421 7241569 ~ 7242363 (+) True G1704423
TU1951420 lncRNA upstream 5917 7240563 ~ 7240867 (+) True G1704420
TU1951419 lncRNA upstream 6957 7239594 ~ 7239827 (+) True G1704419
TU1951415 lncRNA upstream 14194 7232360 ~ 7232590 (+) True G1704415
TU1951414 lncRNA upstream 26998 7219356 ~ 7219786 (+) True G1704414
TU1951427 lncRNA downstream 1618 7248759 ~ 7248982 (+) True G1704427
TU1951435 lncRNA downstream 8389 7255530 ~ 7255741 (+) True G1704433
TU1951436 lncRNA downstream 9687 7256828 ~ 7257028 (+) True G1704434
TU1951455 lncRNA downstream 39851 7286992 ~ 7288160 (+) True G1704447
TU1951454 lncRNA downstream 41983 7289124 ~ 7289402 (+) True G1704446
XR_005038485.1 mRNA upstream 367054 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 367055 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 367055 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 367057 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 942463 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 280386 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 280393 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 280415 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 280904 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 281059 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 96791 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 239044 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 442648 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 840011 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 994464 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 280662 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 280793 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 280793 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 280793 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 410288 7657429 ~ 7657869 (+) True G1704562

Expression Profile