RNA id: TU1951427


Basic Information

Item Value
RNA id TU1951427
length 224
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1704427
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7248759 ~ 7248982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaatgggctgccatcagtcaggatgtggcccagaagttaattgacagcatgccagggcggattgcaaaggtcttgaaaaagaagggtcaacactgcaaatattgactctttgcatcaacttcatgtaattgtcaataaaagcctttgacacttatgaaatgcttgtaattatacttcagtattccatagtaacatctgacaaaaatatctaaagacactgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951426 lncRNA upstream 1618 7246784 ~ 7247141 (+) True G1704426
TU1951423 lncRNA upstream 6396 7241569 ~ 7242363 (+) True G1704423
TU1951420 lncRNA upstream 7892 7240563 ~ 7240867 (+) True G1704420
TU1951419 lncRNA upstream 8932 7239594 ~ 7239827 (+) True G1704419
TU1951415 lncRNA upstream 16169 7232360 ~ 7232590 (+) True G1704415
TU1951435 lncRNA downstream 6548 7255530 ~ 7255741 (+) True G1704433
TU1951436 lncRNA downstream 7846 7256828 ~ 7257028 (+) True G1704434
TU1951455 lncRNA downstream 38010 7286992 ~ 7288160 (+) True G1704447
TU1951454 lncRNA downstream 40142 7289124 ~ 7289402 (+) True G1704446
TU1951442 lncRNA downstream 42115 7291097 ~ 7291795 (+) True G1704440
XR_005038485.1 mRNA upstream 369029 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 369030 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 369030 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 369032 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 944438 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 278545 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 278552 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 278574 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 279063 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 279218 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 98766 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 241019 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 444623 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 841986 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 996439 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 278821 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 278952 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 278952 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 278952 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 408447 7657429 ~ 7657869 (+) True G1704562

Expression Profile