RNA id: TU1951436


Basic Information

Item Value
RNA id TU1951436
length 201
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1704434
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7256828 ~ 7257028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtctactctgtaatgtccagtaactccatgagggaacgtctactctgtgatgtctggtaactccatgagggaacgtctactctgtgatgtccagtaactccattagggaacgtctactctgtgatgtccagtaactccatgagggaacgtctactctgtgatgttcagtaactccatgagggaacgtctactctgtgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951435 lncRNA upstream 1087 7255530 ~ 7255741 (+) True G1704433
TU1951427 lncRNA upstream 7846 7248759 ~ 7248982 (+) True G1704427
TU1951426 lncRNA upstream 9687 7246784 ~ 7247141 (+) True G1704426
TU1951423 lncRNA upstream 14465 7241569 ~ 7242363 (+) True G1704423
TU1951420 lncRNA upstream 15961 7240563 ~ 7240867 (+) True G1704420
TU1951455 lncRNA downstream 29964 7286992 ~ 7288160 (+) True G1704447
TU1951454 lncRNA downstream 32096 7289124 ~ 7289402 (+) True G1704446
TU1951442 lncRNA downstream 34069 7291097 ~ 7291795 (+) True G1704440
TU1951448 lncRNA downstream 48949 7305977 ~ 7353237 (+) False G1704443
TU1951465 lncRNA downstream 69455 7326483 ~ 7327356 (+) True G1704456
XR_005038485.1 mRNA upstream 377098 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 377099 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 377099 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 377101 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 952507 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 270499 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 270506 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 270528 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 271017 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 271172 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 106835 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 249088 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 452692 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 850055 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1004508 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 270775 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 270906 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 270906 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 270906 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 400401 7657429 ~ 7657869 (+) True G1704562

Expression Profile