RNA id: TU1951455


Basic Information

Item Value
RNA id TU1951455
length 525
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G1704447
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7286992 ~ 7288160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggattgttAGGGACAGGAGGGGGGGGGATTGTTAGGGACAGAAGGGGGGGGATTGGATATCATTCataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggaTCGCGTTCATACCAGGGACAGGGGGGGGttggatatcgttcataccagggacaggaggaggattggaTCGcgttcataccagggacaggaggaggattggatcacgttcataccagggacaggaggaggattggatatcattcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatcgcgttcataccagggacaagaggaggattggatcgcgttcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951436 lncRNA upstream 29964 7256828 ~ 7257028 (+) True G1704434
TU1951435 lncRNA upstream 31251 7255530 ~ 7255741 (+) True G1704433
TU1951427 lncRNA upstream 38010 7248759 ~ 7248982 (+) True G1704427
TU1951426 lncRNA upstream 39851 7246784 ~ 7247141 (+) True G1704426
TU1951423 lncRNA upstream 44629 7241569 ~ 7242363 (+) True G1704423
TU1951454 lncRNA downstream 964 7289124 ~ 7289402 (+) True G1704446
TU1951442 lncRNA downstream 2937 7291097 ~ 7291795 (+) True G1704440
TU1951448 lncRNA downstream 17817 7305977 ~ 7353237 (+) False G1704443
TU1951465 lncRNA downstream 38323 7326483 ~ 7327356 (+) True G1704456
TU1951470 lncRNA downstream 45160 7333320 ~ 7333667 (+) True G1704461
XR_005038485.1 mRNA upstream 407262 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 407263 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 407263 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 407265 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 982671 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 239367 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 239374 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 239396 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 239885 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 240040 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 136999 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 279252 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 482856 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 880219 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1034672 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 239643 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 239774 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 239774 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 239774 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 369269 7657429 ~ 7657869 (+) True G1704562

Expression Profile