RNA id: TU1951454


Basic Information

Item Value
RNA id TU1951454
length 279
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1704446
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7289124 ~ 7289402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatatcattcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggatatcattcataccagggacaggaggaggattggatcgcgttcataccagggacaggaggaggattggaTCGCGTTCATACCAATACATCTGAATCAGAAAGATAAACTGCACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951455 lncRNA upstream 964 7286992 ~ 7288160 (+) True G1704447
TU1951436 lncRNA upstream 32096 7256828 ~ 7257028 (+) True G1704434
TU1951435 lncRNA upstream 33383 7255530 ~ 7255741 (+) True G1704433
TU1951427 lncRNA upstream 40142 7248759 ~ 7248982 (+) True G1704427
TU1951426 lncRNA upstream 41983 7246784 ~ 7247141 (+) True G1704426
TU1951442 lncRNA downstream 1695 7291097 ~ 7291795 (+) True G1704440
TU1951448 lncRNA downstream 16575 7305977 ~ 7353237 (+) False G1704443
TU1951465 lncRNA downstream 37081 7326483 ~ 7327356 (+) True G1704456
TU1951470 lncRNA downstream 43918 7333320 ~ 7333667 (+) True G1704461
TU1951475 lncRNA downstream 55821 7345223 ~ 7346406 (+) True G1704462
XR_005038485.1 mRNA upstream 409394 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 409395 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 409395 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 409397 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 984803 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 238125 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 238132 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 238154 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 238643 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 238798 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 139131 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 281384 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 484988 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 882351 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1036804 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 238401 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 238532 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 238532 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 238532 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 368027 7657429 ~ 7657869 (+) True G1704562

Expression Profile