RNA id: TU1951442


Basic Information

Item Value
RNA id TU1951442
length 699
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1704440
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7291097 ~ 7291795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatattatatatatttatatatataacttatatattatatatattatatatatataacttatatattatatatatttccgACTTCATAAACAAAACAGACAATACACATCAACTCATCCCCCATCGCAGGAAAAAATGTTGTGTTGTAAATGGTTAACAAAACCAAAAGCTTCCGCCTAAACCTTTTGTCGTTGGtcccgcccccccccccaccccatatcGCATGTCAATCATCATGATGTCATGATCAACACAGTATATACACAGACATATGGTACCACGTCGTTTGTTTTGAAAAGGTATCCAAAGATGTGAATTCTACCCTCAGAAACTGTGCTTTTTCCACATCTTGGACTATACAGTATATTGGGAGTGTCTTCTAGCATAGGATCTgtatcccaagtggcaccctctcccctatatagtacactaaaagtagtgcactaaaagtagtgcactttgtagggaatatggtaccatttgggattATGACATAGTCATCGTCACACCACCTTTTGTGCACGTAACCAAAACGCTTATCAAAACACAGGCTctaaaccccccccaccccccgcccACTACATTTGGTCCCTTGAATGGTGTTTGGGTGCTTTACAAGTTATTAAAAAGTACAGATCTGTCTCGAGCTTTGGCCAACTGTACTCTAAAAAACATGATCAAATAGAAGAGGAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951454 lncRNA upstream 1695 7289124 ~ 7289402 (+) True G1704446
TU1951455 lncRNA upstream 2937 7286992 ~ 7288160 (+) True G1704447
TU1951436 lncRNA upstream 34069 7256828 ~ 7257028 (+) True G1704434
TU1951435 lncRNA upstream 35356 7255530 ~ 7255741 (+) True G1704433
TU1951427 lncRNA upstream 42115 7248759 ~ 7248982 (+) True G1704427
TU1951448 lncRNA downstream 14182 7305977 ~ 7353237 (+) False G1704443
TU1951465 lncRNA downstream 34688 7326483 ~ 7327356 (+) True G1704456
TU1951470 lncRNA downstream 41525 7333320 ~ 7333667 (+) True G1704461
TU1951475 lncRNA downstream 53428 7345223 ~ 7346406 (+) True G1704462
TU1951447 lncRNA downstream 60469 7352264 ~ 7353237 (+) True G1704443
XR_005038485.1 mRNA upstream 411367 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 411368 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 411368 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 411370 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 986776 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 235732 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 235739 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 235761 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 236250 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 236405 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 141104 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 283357 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 486961 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 884324 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1038777 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 236008 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 236139 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 236139 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 236139 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 365634 7657429 ~ 7657869 (+) True G1704562

Expression Profile