RNA id: TU1951495


Basic Information

Item Value
RNA id TU1951495
length 966
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G1704478
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7379857 ~ 7381471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGATATGGGGATGGGGGTTGGAGGGGGTTCAGTGGAGTCAGGTGACATGGTGATGGGGGTTGGAGGGGGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGATATGGGGAAGGGGGTTGGAGGGTGTCAGGTGACATGGTGATGGAGAAGGGGGAATGAGGGGGGTCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTTGTCAGGTAGTAATCCACTGTAGCGAAGTGATATGATGATGTCATACGACATCAGAAGACAAGGTGACCTGAAATGTCGTCGGGCCTGGAACGCCAGGTGACTTGATATAATGACGCTGTTGATTTAAGTGGCCAGTAAGCTGTGGCCTCGGAGTCAGGGGAGGGTTTTTACCGATGACAATATGGGTTTCTATTGATTCTGATATCAATACATTTCTGCCTGCAGTATAGGTCTCTGCCTGTCTACACTACACCATATATAACCATTCATCCCAGGACAAGGACATAGCTGCCAAAATCATCTCGGTTATTATTGAATCACATTTCTACGTAACTCCAGTCGGGCGCTGTGTAGCAGCattcattggggggggggggggtacaatgAAAACACCTTCAACCAGGTCGTCAGTCAAATCCTTCCGTTCCTCTGTTCTGTTTGACGTCAGACAATAACGTCTTTCCCCTGTCAGAACGGTCTTGGAAGGTTGCTATAGAAACTAACCGGCTTCCACACCACGTCTGCAGTTCCCGAACTCTCCACAGAGCGGCGCTCTGGGTCCATCTGACCGCCTGTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951494 lncRNA upstream 30 7379857 ~ 7380381 (+) False G1704478
TU1951489 lncRNA upstream 2108 7378077 ~ 7378303 (+) True G1704475
TU1951488 lncRNA upstream 3029 7377152 ~ 7377382 (+) True G1704474
TU1951481 lncRNA upstream 19024 7361174 ~ 7361387 (+) True G1704467
TU1951452 lncRNA upstream 20921 7358368 ~ 7359490 (+) True G1704445
TU1951497 lncRNA downstream 8426 7389897 ~ 7391229 (+) True G1704479
TU1951506 lncRNA downstream 23672 7405143 ~ 7405889 (+) True G1704486
TU1951532 lncRNA downstream 80829 7462300 ~ 7463881 (+) True G1704500
TU1951535 lncRNA downstream 85348 7466819 ~ 7471190 (+) True G1704502
TU1951574 lncRNA downstream 171134 7552605 ~ 7561202 (+) True LOC118942849
XR_005038485.1 mRNA upstream 500681 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 500682 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 500682 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 500684 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 1076090 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 146056 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 146063 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 146085 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 146574 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 146729 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 230418 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 372671 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 576275 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 973638 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1128091 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 146332 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 146463 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 146463 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 146463 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 275958 7657429 ~ 7657869 (+) True G1704562

Expression Profile