RNA id: TU1951497


Basic Information

Item Value
RNA id TU1951497
length 577
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G1704479
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7389897 ~ 7391229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGGGGAGCAGCAGTGTTCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAGTGATCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGGGGAGCAGCAGTGTTCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGGGGAGCAGCAGTGTTCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAGTGTCCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAATGTTCTAGGGTTGCTGGTCTTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAGTGTCCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAGTGTCCTAGGGCTGCTGGTCTTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAGTGTTCTAGGGCTGCTGGTCGTATTGTGGGGTATGTAGATGTGGTGGAGCAGCAGTGTCCTAGGGCTGCTGGTCTTATTGTTGGGTATGTAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951493 lncRNA upstream 8426 7379857 ~ 7381471 (+) False G1704478
TU1951495 lncRNA upstream 8426 7380411 ~ 7381471 (+) False G1704478
TU1951496 lncRNA upstream 8426 7380411 ~ 7381471 (+) True G1704478
TU1951494 lncRNA upstream 9516 7379857 ~ 7380381 (+) False G1704478
TU1951489 lncRNA upstream 11594 7378077 ~ 7378303 (+) True G1704475
TU1951506 lncRNA downstream 13914 7405143 ~ 7405889 (+) True G1704486
TU1951532 lncRNA downstream 71071 7462300 ~ 7463881 (+) True G1704500
TU1951535 lncRNA downstream 75590 7466819 ~ 7471190 (+) True G1704502
TU1951574 lncRNA downstream 161376 7552605 ~ 7561202 (+) True LOC118942849
TU1951587 lncRNA downstream 167077 7558306 ~ 7558770 (+) True G1704535
XR_005038485.1 mRNA upstream 510167 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 510168 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 510168 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 510170 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 1085576 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 136298 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 136305 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 136327 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 136816 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 136971 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 239904 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 382157 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 585761 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 983124 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1137577 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 136574 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 136705 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 136705 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 136705 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 266200 7657429 ~ 7657869 (+) True G1704562

Expression Profile