RNA id: TU1951860


Basic Information

Item Value
RNA id TU1951860
length 497
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1704739
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7407098 ~ 7407954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctaaggtagtggactatatagggaatagggccctatctaaggtagtggactatatagggaatagggccctatctaaggtagtgtactatatagggaatagggccctatctaaggtagtggactatatagggaatagggccctatctaaggtagtgtactatatggggaatagggccctatctaaggtagtgtactatatagggaatataaccctatctaaggtagtgtactatatggggaatagggttctatctaaagtagtggactatatagggaatagggccctatctaaggtagtggactatatagggaatagggccctatctaaggtagtgtaatatatagggaatagggccctatctaaggtagtggactatatagggaatagggccctggtctgtagtagtgtactatatagggaatagggccctatctaaggtagtggactatatagggaatagggccctatctaaggtagtgtaatatatagggaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951849 lncRNA downstream 8354 7392237 ~ 7398744 (-) True G1704733
TU1951850 lncRNA downstream 9592 7397177 ~ 7397506 (-) True G1704734
TU1951848 lncRNA downstream 11282 7392237 ~ 7395816 (-) False G1704733
TU1951847 lncRNA downstream 14499 7392237 ~ 7392599 (-) False G1704733
TU1951806 lncRNA downstream 24836 7381761 ~ 7382262 (-) True LOC118942848
TU1951869 lncRNA upstream 23796 7431750 ~ 7432166 (-) True G1704747
TU1951880 lncRNA upstream 57129 7465083 ~ 7465717 (-) True G1704756
TU1951884 lncRNA upstream 60596 7468550 ~ 7469306 (-) True G1704759
TU1951891 lncRNA upstream 75171 7483125 ~ 7483514 (-) True G1704765
TU1951893 lncRNA upstream 80649 7488603 ~ 7489030 (-) True G1704767
XM_036956710.1 mRNA downstream 22659 7380579 ~ 7384439 (-) False LOC118942848
XM_036956709.1 mRNA downstream 99701 7303605 ~ 7307397 (-) True LOC118942847
XM_036956708.1 mRNA downstream 356191 7048896 ~ 7050907 (-) True LOC118942846
XM_036956706.1 mRNA downstream 489562 6890523 ~ 6917536 (-) False LOC118942845
XM_036956721.1 mRNA upstream 182574 7590528 ~ 7679878 (-) False LOC118936572
XM_036956718.1 mRNA upstream 182574 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA upstream 182574 7590528 ~ 7768302 (-) False LOC118936572
XM_036956717.1 mRNA upstream 182574 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA upstream 182574 7590528 ~ 7768303 (-) False LOC118936572
TU1951803 other downstream 25639 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 40958 7365547 ~ 7366140 (-) True G1704726
TU1951802 other downstream 105253 7299200 ~ 7301845 (-) True G1704700
TU1951804 other downstream 108012 7297925 ~ 7299086 (-) True G1704702
TU1951412 other downstream 250041 7156690 ~ 7157057 (-) True G1704412
TU1951903 other upstream 180582 7588536 ~ 7601354 (-) False LOC118936572
TU1951902 other upstream 193848 7601802 ~ 7621841 (-) False LOC118936572
TU1951911 other upstream 249594 7657548 ~ 7768016 (-) True LOC118936572
TU1952105 other upstream 533195 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 580747 7988701 ~ 8002994 (-) True LOC110515713

Expression Profile