RNA id: TU1951532


Basic Information

Item Value
RNA id TU1951532
length 1105
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1704500
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7462300 ~ 7463881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagggctctactgttgaccaggtcctatagagctctactgttggccaggacccatagggctctactgttgaccagggcctatagggctctactgttgaccaggacccatagggctctactgttgaccaggacccatagggctctactgttgaccaggacccatagggctctactgttgaccaggacctatagagCTCTACTGTTGATCAGGATccatagtgctctactgttgaccaggaccatgttaataactgcagtacctcTATTAATAACTGCATTACCTCTTttaataactgcagtacctctctgttaataactgcagtacctctgttaataactgcagtacctcTGTTAATAACTGCATTACCtctgttaataactgcagtacctctgttaataactgcagtacctctgttaataactgcagtacctcTCTGTTATTAACTGCAGTACCTCCCTGTTAATAACTACAGTACTcctgttaataactgcagtacctccctgttaataactgcagtacctccctgttaataactgcagtacctcTGTTAATAATTGCAGTACccctgttaataactgcagtacctcTGTTAATAACTGTAGTTCCTCtctgttaataactgcagtacctccctgttaataactgcagtacctcTGTTAATAATTGCAGTACCTCCCTGTTAATAACTGTAGTTCCTCtctgttaataactgcagtacctccctgttaataactgcagtacctctctgttaataactgcagtacttccctgttaataactgcagtacctcTGTTAATAATTGCAGTACCtctgttaataactgcagtacctcTCTGTTAATAACTGTAGTTCCTCtctgttaataactgcagtacctctctgttaataactgcagtacctctctgttaataactgcagtacctctctgttaataactgcagtacctccctgttaataactgcagtacctccctgttaataactgcagtGCCTCTGATAATAACTGCAGTACCtctgttaataactgcagtacctccctgttaataactgcagtacctccctgttaataactgcagtacctctctgttaataactgcagtacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951506 lncRNA upstream 56411 7405143 ~ 7405889 (+) True G1704486
TU1951497 lncRNA upstream 71071 7389897 ~ 7391229 (+) True G1704479
TU1951493 lncRNA upstream 80829 7379857 ~ 7381471 (+) False G1704478
TU1951535 lncRNA downstream 2938 7466819 ~ 7471190 (+) True G1704502
TU1951574 lncRNA downstream 88724 7552605 ~ 7561202 (+) True LOC118942849
TU1951587 lncRNA downstream 94425 7558306 ~ 7558770 (+) True G1704535
TU1951590 lncRNA downstream 109205 7573086 ~ 7574092 (+) True LOC118942991
TU1951592 lncRNA downstream 132057 7595938 ~ 7600472 (+) True G1704539
XR_005038485.1 mRNA upstream 582570 6712920 ~ 6879730 (+) False LOC118942844
XM_036956703.1 mRNA upstream 582571 6712920 ~ 6879729 (+) False LOC118942844
XM_036956704.1 mRNA upstream 582571 6712920 ~ 6879729 (+) False LOC118942844
XM_036956705.1 mRNA upstream 582573 6783344 ~ 6879727 (+) False LOC118942844
XM_036956700.1 mRNA upstream 1157979 6259819 ~ 6304321 (+) False LOC110500907
XM_036956716.1 mRNA downstream 63646 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA downstream 63653 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA downstream 63675 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA downstream 64164 7528045 ~ 7561975 (+) False LOC118942849
XM_036956714.1 mRNA downstream 64319 7528200 ~ 7561975 (+) False LOC118942849
TU1951409 other upstream 312307 7149400 ~ 7149993 (+) True G1704409
TU1951195 other upstream 454560 7007169 ~ 7007740 (+) True G1704232
TU1951043 other upstream 658164 6803219 ~ 6804136 (+) False LOC118942844
TU1950845 other upstream 1055527 6406032 ~ 6406773 (+) True G1703953
TU1950626 other upstream 1209980 6228114 ~ 6252320 (+) True mrps33
TU1951575 other downstream 63922 7527803 ~ 7545158 (+) False LOC118942849
TU1951567 other downstream 64053 7527934 ~ 7540650 (+) False LOC118942849
TU1951568 other downstream 64053 7527934 ~ 7545158 (+) False LOC118942849
TU1951570 other downstream 64053 7527934 ~ 7545844 (+) False LOC118942849
TU1951624 other downstream 193548 7657429 ~ 7657869 (+) True G1704562

Expression Profile