RNA id: TU1951624


Basic Information

Item Value
RNA id TU1951624
length 419
RNA type TUCP
GC content 0.58
exon number 2
gene id G1704562
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7657429 ~ 7657869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTCCTACTGTAAGgatgtagtagtatagtagcagtatagtagcagtacagtagtaaCAGTGCAGTACCTCTCTCCTACTGTAAGGCTGTAGCACCGCCCCTCCCGACCCTCTATTGGTCTGGAGGTTGATGGAGGAtgtctgtagaggaggaggagaggaggagctccCTGGAGCTGCGCTTCCCGACACCACCTTTTGTCCACCGGTCATGTGCGCTGTCACCATGGCAACGGGAGCTGTCTTGGCGACCGGGTTGGCCGGTAGAACGGAGATGGAGATGCTttgtgaggagggaggaggagggggcttGATGAGGGAGAGGGGCTTGGTGGCCCCTCCTACGGGACAACTTCTAACAGTCAGCTTCTTctgttgaggggagggagggagggaggagagaggagggagggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951597 lncRNA upstream 54676 7602283 ~ 7602753 (+) True G1704543
TU1951596 lncRNA upstream 55640 7600940 ~ 7601789 (+) True G1704542
TU1951592 lncRNA upstream 56957 7595938 ~ 7600472 (+) True G1704539
TU1951590 lncRNA upstream 83337 7573086 ~ 7574092 (+) True LOC118942991
TU1951574 lncRNA upstream 96227 7552605 ~ 7561202 (+) True LOC118942849
TU1951607 lncRNA downstream 4457 7662326 ~ 7704714 (+) True G1704549
TU1951660 lncRNA downstream 86544 7744413 ~ 7744889 (+) True G1704598
TU1951686 lncRNA downstream 127760 7785629 ~ 7785986 (+) True G1704623
TU1951690 lncRNA downstream 135209 7793078 ~ 7793304 (+) True G1704627
TU1951692 lncRNA downstream 139239 7797108 ~ 7797573 (+) True G1704629
XM_036958454.1 mRNA upstream 82671 7561344 ~ 7574758 (+) False LOC118942991
XM_036956716.1 mRNA upstream 95454 7527527 ~ 7561975 (+) False LOC118942849
XM_036956711.1 mRNA upstream 95454 7527534 ~ 7561975 (+) False LOC118942849
XM_036956712.1 mRNA upstream 95454 7527556 ~ 7561975 (+) False LOC118942849
XM_036956713.1 mRNA upstream 95454 7528045 ~ 7561975 (+) False LOC118942849
XM_036956722.1 mRNA downstream 142797 7800666 ~ 7829915 (+) False LOC110510398
XM_036956723.1 mRNA downstream 142798 7800667 ~ 7829915 (+) False LOC110510398
XM_036956725.1 mRNA downstream 143996 7801865 ~ 7829915 (+) False LOC110510398
XM_036956724.1 mRNA downstream 143997 7801866 ~ 7829915 (+) False LOC110510398
XM_036956727.1 mRNA downstream 143997 7801866 ~ 7829915 (+) False LOC110510398
TU1951570 other upstream 111585 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 112271 7527803 ~ 7545158 (+) False LOC118942849
TU1951568 other upstream 112271 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 116779 7527934 ~ 7540650 (+) False LOC118942849
TU1951409 other upstream 507436 7149400 ~ 7149993 (+) True G1704409
TU1951729 other downstream 191691 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 881059 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 881059 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 886103 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 886103 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile