RNA id: TU1951686


Basic Information

Item Value
RNA id TU1951686
length 358
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1704623
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7785629 ~ 7785986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagagttccatgtggtcatgtctctatgtagtactgtggaatagagttccatgtaatgtagtcatggctctatgtagtactgtgcacctcccatagtctgttctggacttggggactgtgaagagacctctggtgacatgtcttgtggggtatgtatgggtgtctgagctgtgtgttagtagtttaaacagacctctggtggcatgtcttgtggggtatgtatgggtgtctgagctgtgtgttagtagtttagacagacagctcggtgaattcaacatgtcaatacctctcataaatacaagcagtgatgaagtcaacctctcctccactttgagccaggagagattgacatgcgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951660 lncRNA upstream 40740 7744413 ~ 7744889 (+) True G1704598
TU1951607 lncRNA upstream 80915 7662326 ~ 7704714 (+) True G1704549
TU1951597 lncRNA upstream 182876 7602283 ~ 7602753 (+) True G1704543
TU1951596 lncRNA upstream 183840 7600940 ~ 7601789 (+) True G1704542
TU1951592 lncRNA upstream 185157 7595938 ~ 7600472 (+) True G1704539
TU1951690 lncRNA downstream 7092 7793078 ~ 7793304 (+) True G1704627
TU1951692 lncRNA downstream 11122 7797108 ~ 7797573 (+) True G1704629
TU1951722 lncRNA downstream 32043 7818029 ~ 7818399 (+) True G1704645
TU1951707 lncRNA downstream 47325 7833311 ~ 7834957 (+) True G1704634
TU1951709 lncRNA downstream 51193 7837179 ~ 7839343 (+) True G1704636
XM_036958454.1 mRNA upstream 210871 7561344 ~ 7574758 (+) False LOC118942991
XM_036956712.1 mRNA upstream 223654 7527556 ~ 7561975 (+) False LOC118942849
XM_036956722.1 mRNA downstream 14680 7800666 ~ 7829915 (+) False LOC110510398
XM_036956723.1 mRNA downstream 14681 7800667 ~ 7829915 (+) False LOC110510398
XM_036956725.1 mRNA downstream 15879 7801865 ~ 7829915 (+) False LOC110510398
XM_036956724.1 mRNA downstream 15880 7801866 ~ 7829915 (+) False LOC110510398
XM_036956727.1 mRNA downstream 15880 7801866 ~ 7829915 (+) False LOC110510398
TU1951624 other upstream 127760 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 239785 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 240471 7527803 ~ 7545158 (+) False LOC118942849
TU1951729 other downstream 63574 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 752942 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 752942 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 757986 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 757986 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile