RNA id: TU1952065



Basic Information


Item Value
RNA id TU1952065
length 324
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G1704899
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7818815 ~ 7819853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtctctagataaggttgaataacatacccaggttggtgtcagcagTCTCTAGATCAGGTtgaataacatacccaggttggtgtcagcggtctctagataaggtttataacatacccaggttggtgtcagcggtctctagataaggttgaataacatacccaggttggtgtcagcgcGGACTAGCAGCTGTGTCTTTCCGTCTGAGGTGGTTTTCAGATGCAGCGTTCCAACTCCCTTCTCCTTGAACTCCGTCTCTTTCTTATAGAACAGTTtacacctggaacacacacacacacacacacacacacacacacacacacacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1952055 lncRNA downstream 12876 7804169 ~ 7805939 (-) True G1704889
TU1952052 lncRNA downstream 15464 7802012 ~ 7803351 (-) True G1704887
TU1952045 lncRNA downstream 30897 7786805 ~ 7787918 (-) True G1704881
TU1952044 lncRNA downstream 32147 7786317 ~ 7786668 (-) True G1704880
TU1952043 lncRNA downstream 32815 7785720 ~ 7786000 (-) True G1704879
TU1952066 lncRNA upstream 237 7820090 ~ 7822403 (-) True G1704900
TU1952024 lncRNA upstream 17307 7837160 ~ 7838733 (-) False LOC110516645
TU1952073 lncRNA upstream 31797 7851650 ~ 7852136 (-) True G1704905
TU1952092 lncRNA upstream 51671 7871524 ~ 7871813 (-) True G1704916
TU1952093 lncRNA upstream 52604 7872457 ~ 7872657 (-) True G1704917
XM_036956717.1 mRNA downstream 50512 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 50512 7590528 ~ 7768303 (-) False LOC118936572
XM_036956718.1 mRNA downstream 50513 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA downstream 50513 7590528 ~ 7768302 (-) False LOC118936572
XM_036956721.1 mRNA downstream 138937 7590528 ~ 7679878 (-) False LOC118936572
XM_036956728.1 mRNA upstream 17297 7837150 ~ 7899152 (-) False LOC110516645
XM_036956729.1 mRNA upstream 17297 7837150 ~ 7899175 (-) False LOC110516645
XR_005038487.1 mRNA upstream 69058 7888911 ~ 7890273 (-) True LOC118942852
XM_036956756.1 mRNA upstream 81859 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 81859 7901712 ~ 7924740 (-) False LOC110517214
TU1951911 other downstream 50799 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 196974 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 217461 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 437356 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 452675 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 121296 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 168848 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 206436 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 206436 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 711882 8531735 ~ 8532803 (-) False G1705386

Expression Profile