RNA id: TU1951707


Basic Information

Item Value
RNA id TU1951707
length 1456
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1704634
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7833311 ~ 7834957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagacacacctggactagacacacctggactagacacacctggactagacacacctggactagacacactgtAACCCAGAGACGTACATGTGACCGTTGAAATGTTTTATTTGCATGCGTTGTGTAGCAACACACATTTTTAGTTGTAAAATATGGTTGTGATTATTACTGTGAAAGTCCACTGGGCTCCACTGTCTTGCTCCTAGCAGACACGAGACTTGTTGAATGACCCATATCCATTCATCTTGTCGTTGGGGGGGTTCAGTAACATTCCGTCTAGATTGAATACTGCTGCTATAGTTTGAGTTGAAAGACGACAGGGAAGCAGGCTGATGTTTTAAACTGTTGGCGATACTGTGGGTTCTTCTGGTTGTGGACAAGAGGAGACCTTTAATTAAAGTGTGGTAGACTAGTATGACGAGGGactgtgttttttttcccccacctgCTCTCTGTCCAGCTCTCCGAGGATAACTTGAGGAGTTCAACCGTGTTTTCAAAGGGGTGTGTCGATGAGGGTTCAtttcaaatggctccctattccctatctagtgcactatgtagggaatagggtcccccccccatagggccctggtcaaaagtagtgcactatgtagggaatagggagccattttagCCGCAGGCCCTTTATGTTAATGCAAGACTGGGTCAGTTTTAGCAGATCATCTGAGAACTAGATaaaccctcccctccccaacAGCATCTAGTTAGTTCTCACCTTTCACTGCCTAaacctagtgttgtctgtctgtgtgtttctactgaatgtttgttcatttttttttttttgtaagacTGTATTTATTGTAACAGATAAATGGGAATATGTTGTGCTGGAGTGAGATTCATTATTTTACCTGTCTTGAGTAAATGGACTCCATCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGGAAATGGACTCCATCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGGTTCACCCATAACTGTGTACCTGTCTGAGGAAATGGACTCCATCTCCCTCGTGGAATTACACTCACTCAAAATGGCCGCCGGTTCACCCACAACTGTCTCGAAAGGGAATGTCTGCTTCAGTAATTGTCTTTCTTTGAGAATATGTCTCCCTTCACAGCCTCTCAGaggcattatatatatatatttctagagCTGCTCAAAAGAAGCACACCATTTTGGATGCAGGGAGAGGGCCTGTAAGGTCACAGTCTGTTTTCCACAAGGCATCATCAGTTGGTGTGAAAGGATGCTCTTTCCTTCGTCTCTAGGTTTGGTTGTTTCCAAGTGTCCTTTTTGTCTGTCGCTGAGGTGAGGCAATGCAGCCGTCGCCTGTCTGAAACATTTTGTAGTCATTGATTTAACATGGGGAATAAATTCATCAACAATTCAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951722 lncRNA upstream 14912 7818029 ~ 7818399 (+) True G1704645
TU1951692 lncRNA upstream 35738 7797108 ~ 7797573 (+) True G1704629
TU1951690 lncRNA upstream 40007 7793078 ~ 7793304 (+) True G1704627
TU1951686 lncRNA upstream 47325 7785629 ~ 7785986 (+) True G1704623
TU1951660 lncRNA upstream 88422 7744413 ~ 7744889 (+) True G1704598
TU1951709 lncRNA downstream 2222 7837179 ~ 7839343 (+) True G1704636
TU1951728 lncRNA downstream 11528 7846485 ~ 7846694 (+) True G1704650
TU1951730 lncRNA downstream 15954 7850911 ~ 7852297 (+) True G1704652
TU1951732 lncRNA downstream 40272 7875229 ~ 7876500 (+) True G1704654
TU1951712 lncRNA downstream 63317 7898274 ~ 7899551 (+) True G1704639
XM_036956722.1 mRNA upstream 3396 7800666 ~ 7829915 (+) False LOC110510398
XM_036956723.1 mRNA upstream 3396 7800667 ~ 7829915 (+) False LOC110510398
XM_036956725.1 mRNA upstream 3396 7801865 ~ 7829915 (+) False LOC110510398
XM_036956724.1 mRNA upstream 3396 7801866 ~ 7829915 (+) False LOC110510398
XM_036956727.1 mRNA upstream 3396 7801866 ~ 7829915 (+) False LOC110510398
XM_036956732.1 mRNA downstream 38658 7873615 ~ 7877834 (+) False LOC118936573
XM_036956731.1 mRNA downstream 38658 7873615 ~ 7878590 (+) True LOC118936573
XM_036956730.1 mRNA downstream 47292 7882249 ~ 7883321 (+) True LOC118942851
XM_036956483.1 mRNA downstream 90059 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 90059 7925016 ~ 7943584 (+) False yt6j
TU1951624 other upstream 175442 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 287467 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 288153 7527803 ~ 7545158 (+) False LOC118942849
TU1951729 other downstream 14603 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 703971 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 703971 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 709015 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 709015 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile