RNA id: TU1951709


Basic Information

Item Value
RNA id TU1951709
length 2165
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G1704636
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7837179 ~ 7839343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAAAGTGTTGGGACAAATGCCAGTTCAGCAATGGACTCATATAATTCACCACATAATGCTACAAATGAAGAAACACAGAGTATGTATAtacacagaagtatgtggacaccccttcaaatgagtggatttggctatttcagccacacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatctccatagacaaacattggcagtagaatggccatactgaagagctcagtgaccttcaatgtggcacctttccaacaagtcagttggtcaaatttctgccctgctagagctgcccccggtcaactgtaagtgctgctattgtgaagtggaaacgtctaggagcaacaacggctgtGGTAGaccacagaacgggaccgccgagtgctgaagcccgTGGCAACACtcgctaccgagttccaaactaacTAACTATGgaagcagtttggggaaggccctttcctgtttcagcatgacaatgccccctgtgcacaaagtcAGGTCCATACAAAAGTGGtgtgtcgagatcggtgtggaagaacttgactggcctgcacagaaccagTTGGGGGAGACCCAACTCCATactaatgctcatgattttgaaatgagatgtttgacgaccaggtgtccacatacttttgtccatgtagtgtatgtatgttCTGTCTAAATGGTTTTAGTTAGAAGCTCAAAATGTTGAGGCAGTGTCGACATTTAATTATATTTTGTGTGGCAGGAATGGGCTTCCATAAATACAACTATCCCAGGCtcgctccctcccccttctcctcatAGTCGTGTGAGTCGCTCCAGAATTGGAATTGATTAGCATATCACTCAGTAAATCCACACCCCCTTAGTTCCAGACAGTCCCACAGTCACCAGGCTCTACATAACAGCAGCCTGGGGACGAGACCAGACAGAAACAGGGTTTAGTATCTTACCGCTACTAAAGCtgagtatcagcaggccctgcgTTTCTATATTCAGCCATCTTGTTCCAGTGCTGAGGAAAAACTTtctcacacgtgtgtgtgtgtgtgtgtgaatttccACATCATTGTTTTTTAATTTTTCTATATAGATGATAATTTCGGTTCCCTGTTGAAAGTTCGTCACGTTAAACTGAAGAGTTGAAGGGTCTCCAGACTGTGAGCCTGATGGAAGCCTACTCCCTGGTCAATACGGTGCCCTTCTGGTCTCAGAGTAACATCCTTTATGTGCCAGTGGTGTGCTGATAGACTGAAGGCAGCACATCCACAAAGCCCTGGGACTTAGACAACGAtgttagacacacagacacacactcccttTAACCTTCCCCGCCTCGcagacagaaacacaaacacgCAACGACAAAACAGACAGAAGCTTTATGTTCCCATCAGAAGAAGCGTAACCTTTCCTAAAGGCTTATCAGTGAATAGTTAAGCAGCAGGATATTTACAAGAAAACAGGAGAcgttgtccaaaatggcaccctattcccttttacagagcactactttagatcagagtcCACACAGGGCTAAGGCCAACGTTAGTGCACTAAACTGGGAAGAGAGTTCCATTTTAGATTCGTCCAGAGACATTCTAAATAATTTTAGTTCCAGGTCAGAGTTCAGCCAATGGTACTGCACTTCACGACCATTGTGATCCTGACAGGACAGGTGGGTTGCTATGCCCGTTTCCCTGGCGACCGCCTCACACCCACCGGCGAATCCTCATCGAGCAGGAACATGACAGGGAAGAGGCACTTTTTTGATTGGCTGGTTTTCATTGTTCCAAAGTTGTTTTTTAGTCACCTCTTGCCATTGACTCCAGGTTTGGTTGTAGTTCTCTGTCTCGCCACCAGATGGTGGTAGTGTTGCTGTAattcctccatctcaccaccaGATGGTGGTAGTGTTGCTGTAattcctccatctcaccaccaGATGGTGGTAGTGTTGCTGTAattcctccatctcaccaccaGATGGTGGTAGGGTTGCTGTacttcctccatctcaccaacaGATGGTGGTAGTGTTGCTGTAGTTTTCCATCTCACCACTGGTTTGTAGTGGTGCCTGATGCAGGAAGGCACTTCGTAGGGAGGCTCTGGGGCAGTTAGGAGGACTGGAGCTCTGATCTGCTATGTCATCAGGATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951707 lncRNA upstream 2222 7833311 ~ 7834957 (+) True G1704634
TU1951722 lncRNA upstream 18780 7818029 ~ 7818399 (+) True G1704645
TU1951692 lncRNA upstream 39606 7797108 ~ 7797573 (+) True G1704629
TU1951690 lncRNA upstream 43875 7793078 ~ 7793304 (+) True G1704627
TU1951686 lncRNA upstream 51193 7785629 ~ 7785986 (+) True G1704623
TU1951728 lncRNA downstream 7142 7846485 ~ 7846694 (+) True G1704650
TU1951730 lncRNA downstream 11568 7850911 ~ 7852297 (+) True G1704652
TU1951732 lncRNA downstream 35886 7875229 ~ 7876500 (+) True G1704654
TU1951712 lncRNA downstream 58931 7898274 ~ 7899551 (+) True G1704639
TU1951739 lncRNA downstream 89106 7928449 ~ 7928828 (+) True G1704659
XM_036956723.1 mRNA upstream 7264 7800667 ~ 7829915 (+) False LOC110510398
XM_036956732.1 mRNA downstream 34272 7873615 ~ 7877834 (+) False LOC118936573
XM_036956731.1 mRNA downstream 34272 7873615 ~ 7878590 (+) True LOC118936573
XM_036956730.1 mRNA downstream 42906 7882249 ~ 7883321 (+) True LOC118942851
XM_036956483.1 mRNA downstream 85673 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 85673 7925016 ~ 7943584 (+) False yt6j
TU1951624 other upstream 179310 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 291335 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 292021 7527803 ~ 7545158 (+) False LOC118942849
TU1951729 other downstream 10217 7849560 ~ 7850120 (+) True G1704651
TU1952417 other downstream 699585 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 699585 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 704629 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 704629 8543972 ~ 8561212 (+) False LOC118942994

Expression Profile