RNA id: TU1951730



Basic Information


Item Value
RNA id TU1951730
length 668
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1704652
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7850911 ~ 7852297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagagagacgcacacgtTAGAACAGTGATTCTCAACTAGTGGGTTGCGACCCAAATTGGGTCTCGGGAGGTTCTGAATGGGTCGCGggtatctctaatgaacttatcctctgcaggagaggtaactctgggtctaatgatggactgaccttcatgtcttaaagtaacgatggactgaccttcatgtcttaaagtaacgatggactgtcatttctctttgcttatttgagctgttcttgacataatatggacttggtcttttaccaaatagggccatcttctgtataccacccctaccttgtcacaacacaactgacaggCTCGAACCCATTAAGtaaagaaattcaacaaattcACTTTTTacaaaacacacctgttaataCCTCATGAAacttagggctcccgagtggcgcaggggtctaagaggcgtcactacagtccctggttcgaatccaggctgtatcacatccggacgtgattgggagtcccatagggcagcgcacaattggcccagcgttgtctgggtttggccggggtaggctgtcattgtaaataagaatttattcttgactgacttgcctagttaaataaaggttaaataaaaacacatttaaaaagctggttgagagaacgcccagagtgcaaagctgtcatcaaggcaaagggtgg

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1951728 lncRNA upstream 4217 7846485 ~ 7846694 (+) True G1704650
TU1951709 lncRNA upstream 11568 7837179 ~ 7839343 (+) True G1704636
TU1951707 lncRNA upstream 15954 7833311 ~ 7834957 (+) True G1704634
TU1951722 lncRNA upstream 32512 7818029 ~ 7818399 (+) True G1704645
TU1951692 lncRNA upstream 53338 7797108 ~ 7797573 (+) True G1704629
TU1951732 lncRNA downstream 22932 7875229 ~ 7876500 (+) True G1704654
TU1951712 lncRNA downstream 45977 7898274 ~ 7899551 (+) True G1704639
TU1951739 lncRNA downstream 76152 7928449 ~ 7928828 (+) True G1704659
TU1951705 lncRNA downstream 89655 7941952 ~ 7943574 (+) True yt6j
TU1951751 lncRNA downstream 119022 7971319 ~ 7971778 (+) True G1704671
XM_036956723.1 mRNA upstream 20996 7800667 ~ 7829915 (+) False LOC110510398
XM_036956732.1 mRNA downstream 21318 7873615 ~ 7877834 (+) False LOC118936573
XM_036956731.1 mRNA downstream 21318 7873615 ~ 7878590 (+) True LOC118936573
XM_036956730.1 mRNA downstream 29952 7882249 ~ 7883321 (+) True LOC118942851
XM_036956483.1 mRNA downstream 72719 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 72719 7925016 ~ 7943584 (+) False yt6j
TU1951729 other upstream 791 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 193042 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 305067 7527934 ~ 7545844 (+) False LOC118942849
TU1951575 other upstream 305753 7527803 ~ 7545158 (+) False LOC118942849
TU1952417 other downstream 686631 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 686631 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 691675 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 691675 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 998101 8850398 ~ 8851107 (+) True G1705229

Expression Profile