RNA id: TU1952093



Basic Information


Item Value
RNA id TU1952093
length 201
lncRNA type intronic
GC content 0.51
exon number 1
gene id G1704917
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7872457 ~ 7872657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acctgctggttacttgtccaatgctctaaccactaggctacctgctggttactagtccaacgttctaaccactaggctacctgctggttactggtccaacgctctaaccactaggctacctgctggttactggtccaacgctctaaccactaggctacctgctggttactagtccaatgctctaaccactaggctacctgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1952092 lncRNA downstream 644 7871524 ~ 7871813 (-) True G1704916
TU1952073 lncRNA downstream 20321 7851650 ~ 7852136 (-) True G1704905
TU1952024 lncRNA downstream 33724 7837160 ~ 7838733 (-) False LOC110516645
TU1952066 lncRNA downstream 50054 7820090 ~ 7822403 (-) True G1704900
TU1952065 lncRNA downstream 52604 7818815 ~ 7819853 (-) True G1704899
TU1952032 lncRNA upstream 1065 7873722 ~ 7882498 (-) False LOC110516645
TU1952033 lncRNA upstream 1065 7873722 ~ 7882498 (-) False LOC110516645
TU1952034 lncRNA upstream 1065 7873722 ~ 7882498 (-) False LOC110516645
TU1952029 lncRNA upstream 5410 7878067 ~ 7882498 (-) False LOC110516645
TU1952030 lncRNA upstream 5410 7878067 ~ 7882498 (-) False LOC110516645
XM_036956717.1 mRNA downstream 104154 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 104154 7590528 ~ 7768303 (-) False LOC118936572
XM_036956718.1 mRNA downstream 104155 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA downstream 104155 7590528 ~ 7768302 (-) False LOC118936572
XM_036956721.1 mRNA downstream 192579 7590528 ~ 7679878 (-) False LOC118936572
XR_005038487.1 mRNA upstream 16254 7888911 ~ 7890273 (-) True LOC118942852
XM_036956756.1 mRNA upstream 29055 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 29055 7901712 ~ 7924740 (-) False LOC110517214
XM_036956758.1 mRNA upstream 29055 7901712 ~ 7924740 (-) False LOC110517214
XM_036956759.1 mRNA upstream 29055 7901712 ~ 7924740 (-) False LOC110517214
TU1951911 other downstream 104441 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 250616 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 271103 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 490998 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 506317 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 68492 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 116044 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 153632 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 153632 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 659078 8531735 ~ 8532803 (-) False G1705386

Expression Profile