RNA id: TU1952094


Basic Information

Item Value
RNA id TU1952094
length 1704
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1704918
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7890872 ~ 7892620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtcccctGTATCAGAATGCTGTATGtctctataggaccctggtcccctGTATCAGAATGCTGTATGtctctataggaccctggtcccctGTATCAGAATGCTGTATGGCTCCTATGGGCGCGGCCAAACAGATTTTGGTTGGTGGTCTGTGCGCCTGTGGAGTGGGTCTAATTTGGCAAACATGTCTCCCGTCAAGACTTCAACTCATCTGATCTTTATTTGTTGTTTGTGAAAATGGATGGACACGTCATCTCTGCTGTCCCTCACCGTAGAACTCCCATTGAGGAAGCTTTTGGATATCACGGATCCAGATCAACGGGCCAGTTGGCCACGGCCCTCTGACTCCCTGCCCCACTACCCAGTCCTCTACTCTAGTTACTGATGGCCACGGCCCTCTGACTCCCTGTCCCACTACCCAGTCCTCTATTCTAGTTACTGATGGCCACGGCCCTCTGACTCCCTGCCCCACTAcccattcctctactgtagttactGATGACCCTCTGACTCCCTGCCCCACTACCCAGTCCTCTACTCTAGTTACTGATGGCCACGGCCCTCTGACTCCCTGCCCCACTACCCAGCCCTCTACTCTAGTTACTGATGGCCCTCTGACTCTGACTCCCTGCCCCACTACCCAGTCCTCTACTCTAGTTACTGATGGCCCTATGACTCTGACTCCCTGTCCCTCTACCCAGTCCTCTACTCTAGTTACTGATGCTGTATGAGCAGCTTGAGGAGGACTGCAGGTTATAGGACAATGAGGTCCTGTGTCATGAattatctccctctgtctctctcctcttgtgtctctctctctcctctctgtctctctcctctctctctgtctcctccctctgtctctctctgccattcAGAGGGACCTACTGTTTGCCTCATATCTATTAACAGGAGACAATGGGAGGCTGTTAAACAACAGACAAGGGACACACTCAATATGTTTAGTTTAGAAAAGGTTCATGTCCTCAATGAGGAGATACATTTGGCAGTAATTCCAGTACATACAGACCACATCCCATAAACAAGCAGAACACATAGCAGAGGAAAGAGGTTGAGTGATGTTTTAAACATGTCCTGTCTTTGTTCTACTACACTTATGATTAAGACTGTCAGAGCTCGTTGGACGATCCAGCGTTAACCAGTTAacaaatgggtgggctatttaacCAGTTAacaaatgggtgggctatttaacCAGTTAACCAGTTAACACCTTGTTATTCTCCACTGGGACGTCAGTCAGTCTTAGAAGACCAAGTTAGTCTGTCTAATCTCTTTGAGGAGGTACCacgtctggctgtgtgtgtgtgtgtgttcctctgtgacAACAGTATGGGTTTTATGTTGTAGTTCCCTGTTTGACAGACCACATCAGAGTGCTGGTCTTGTAGTATAAAGTCAACTGAAATAGTTGAAAAAGAAATAGTCACATTATAGCCTAACATTTTGACTGAGGAAACACAAGAATAGATCTTGGTGATTCTCCTGTTGTCATGAGGTGTTCTAGAACAGAGCAGTGTTCTAGAACAGAGCAGTGTTCTAGAACAAAGCAGTGTTCTAGAACAGAGCAGTAGGAGGTAGTAGGAGGCTTcttgtatctgtgtctgtgttgcaCCACGTTGGAGAAAACAGGCCCTGCTCCTTttgcttctctctccccctctcctccctctctcttcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952032 lncRNA downstream 8374 7873722 ~ 7882498 (-) False LOC110516645
TU1952033 lncRNA downstream 8374 7873722 ~ 7882498 (-) False LOC110516645
TU1952034 lncRNA downstream 8374 7873722 ~ 7882498 (-) False LOC110516645
TU1952029 lncRNA downstream 8374 7878067 ~ 7882498 (-) False LOC110516645
TU1952030 lncRNA downstream 8374 7878067 ~ 7882498 (-) False LOC110516645
TU1952095 lncRNA upstream 1371 7893991 ~ 7894314 (-) True G1704919
TU1952096 lncRNA upstream 1801 7894421 ~ 7894688 (-) True G1704920
TU1952097 lncRNA upstream 2318 7894938 ~ 7896127 (-) True G1704921
TU1952098 lncRNA upstream 7026 7899646 ~ 7900224 (-) True G1704922
TU1952099 lncRNA upstream 8606 7901226 ~ 7962861 (-) True G1704923
XR_005038487.1 mRNA downstream 599 7888911 ~ 7890273 (-) True LOC118942852
XM_036956717.1 mRNA downstream 122569 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 122569 7590528 ~ 7768303 (-) False LOC118936572
XM_036956718.1 mRNA downstream 122570 7590528 ~ 7768302 (-) False LOC118936572
XM_036956719.1 mRNA downstream 122570 7590528 ~ 7768302 (-) False LOC118936572
XM_036956756.1 mRNA upstream 9092 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 9092 7901712 ~ 7924740 (-) False LOC110517214
XM_036956758.1 mRNA upstream 9092 7901712 ~ 7924740 (-) False LOC110517214
XM_036956759.1 mRNA upstream 9092 7901712 ~ 7924740 (-) False LOC110517214
XM_036956760.1 mRNA upstream 9092 7901712 ~ 7924740 (-) True LOC110517214
TU1951911 other downstream 122856 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 269031 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 289518 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 509413 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 524732 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 48529 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 96081 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 133669 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 133669 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 639115 8531735 ~ 8532803 (-) False G1705386

Expression Profile