RNA id: TU1952096



Basic Information


Item Value
RNA id TU1952096
length 268
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1704920
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7894421 ~ 7894688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaattatggtggaaaataagtatttgatcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttacgaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacaccggtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtccaAAGGAcaccatctttttaagtgggagaactttggcacaattggtggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1952095 lncRNA downstream 107 7893991 ~ 7894314 (-) True G1704919
TU1952094 lncRNA downstream 1801 7890872 ~ 7892620 (-) True G1704918
TU1952034 lncRNA downstream 11923 7873722 ~ 7882498 (-) False LOC110516645
TU1952097 lncRNA upstream 250 7894938 ~ 7896127 (-) True G1704921
TU1952098 lncRNA upstream 4958 7899646 ~ 7900224 (-) True G1704922
TU1952099 lncRNA upstream 6538 7901226 ~ 7962861 (-) True G1704923
TU1952101 lncRNA upstream 9368 7904056 ~ 7904596 (-) True G1704924
TU1952104 lncRNA upstream 38669 7933357 ~ 7934313 (-) True G1704926
XR_005038487.1 mRNA downstream 4148 7888911 ~ 7890273 (-) True LOC118942852
XM_036956717.1 mRNA downstream 126118 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 126118 7590528 ~ 7768303 (-) False LOC118936572
XM_036956718.1 mRNA downstream 126119 7590528 ~ 7768302 (-) False LOC118936572
XM_036956756.1 mRNA upstream 7024 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 7024 7901712 ~ 7924740 (-) False LOC110517214
XM_036956758.1 mRNA upstream 7024 7901712 ~ 7924740 (-) False LOC110517214
XM_036956759.1 mRNA upstream 7024 7901712 ~ 7924740 (-) False LOC110517214
XM_036956760.1 mRNA upstream 7024 7901712 ~ 7924740 (-) True LOC110517214
TU1951911 other downstream 126405 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 272580 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 293067 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 512962 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 528281 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 46461 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 94013 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 131601 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 131601 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 637047 8531735 ~ 8532803 (-) False G1705386

Expression Profile