RNA id: TU1951712


Basic Information

Item Value
RNA id TU1951712
length 1278
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G1704639
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7898274 ~ 7899551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCCACTAGTTTCTTGTCTGACAGTAAGACGGTTCCGTTCGTCGGCTATCGCCTTCAACATCTCTTGTAGAGAACGATCCGGTTCTCCGTTCTCCTCCTCCACCGGCCCGACCTTCTTACAAACACTGGGAGAGGATGCCATTCCCAGCCCGGGCTCATGACAGTCCTACCACGGCAGATCCACCCGACCGACCGGGAGAAAGACAGAGGCGGTGGGGATACCGGGCCGTGTCTCCACTAAAACCACCCACGGGTGGTAATCCACGGGATTTATTCCAGACGATATTTACCAATAACACGGTCCCCTTGTCTGGTCACCGCTGAATGTTAAAGCCTCTGAGTAGGAGACTTCCGTCTGGCTCTCTGGATCAGCTGGGGAGGAATGCTCTCACACTTCCTGGATATTATGCAGAACAACAGAGAACATTTAAAGGAGAAGTGACCATTTACGTCGATTTCTCataaattgatattttgggtGAACATTTCCATTCTAGCAAACAGTCAAATACCAGGCACGTtgtaacaaatcaaatgtatatatGTCTCCTAGATACGTTTCCCGCGTGTGGATCAGCCGGACAGGCCTATGATGTTTCCGTTGGTCTCGAGCTGacgggaagaggggaggggaggcgggGCAGCGGATATTCGGTGCGAGCTCCCGGTGATCTCCGAAGATGACGGAATTGGTACGAGACGTTTTTTTTCTCCGTTTTCAGGATTCCTCCAAGTTCTAGATGCAATTATTTATaagtgtttattattatttttccagACAATCAACAACTGTCAATTACAGCACATCcagtacagtaggctacaaaCCCATCTGTCCGTTTTCTAATGTCATAATTTATATCTAGGCCTACTACTGCACAAGCCAAGGCATTAGTTCATGTCAATCTTCCATAAATAGCCTGGTTCCGCGTTTATCGCACGATATGATGAAGAATGGCCGATAAAAATCATGTTGTAGATTGACTCAATTATTAATGTGAGACCATAGAGAATGCTAGAGGCCTCTAGTGTCCAAATGGCGATTTTAGGCATGGGCAGCGACATTGATGGTTTTCACCATGCTCCTGACAGTTGAAAGTAGTCAGTTGGTTGAggattcctatgggttgtagCCTCAATGGAGTTTCCCATGTTGTCACAGACGCTATAATGACACCGGtataaagatgagtcctctatctatctctatgtgaGAGACGGAGCGACCATCGCTCCCAGCTCATCTCATGTTCTGTAGGCTCTCTGCCGTTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951732 lncRNA upstream 21774 7875229 ~ 7876500 (+) True G1704654
TU1951730 lncRNA upstream 45977 7850911 ~ 7852297 (+) True G1704652
TU1951728 lncRNA upstream 51580 7846485 ~ 7846694 (+) True G1704650
TU1951709 lncRNA upstream 58931 7837179 ~ 7839343 (+) True G1704636
TU1951707 lncRNA upstream 63317 7833311 ~ 7834957 (+) True G1704634
TU1951739 lncRNA downstream 28898 7928449 ~ 7928828 (+) True G1704659
TU1951705 lncRNA downstream 42401 7941952 ~ 7943574 (+) True yt6j
TU1951751 lncRNA downstream 71768 7971319 ~ 7971778 (+) True G1704671
TU1951756 lncRNA downstream 76215 7975766 ~ 7976717 (+) True G1704675
TU1951766 lncRNA downstream 88660 7988211 ~ 7988453 (+) True G1704683
XM_036956730.1 mRNA upstream 14953 7882249 ~ 7883321 (+) True LOC118942851
XM_036956731.1 mRNA upstream 19684 7873615 ~ 7878590 (+) True LOC118936573
XM_036956732.1 mRNA upstream 20440 7873615 ~ 7877834 (+) False LOC118936573
XM_036956723.1 mRNA upstream 68359 7800667 ~ 7829915 (+) False LOC110510398
XM_036956483.1 mRNA downstream 25465 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA downstream 25465 7925016 ~ 7943584 (+) False yt6j
NM_001160647.1 mRNA downstream 25498 7925049 ~ 7943583 (+) False yt6j
XM_036956762.1 mRNA downstream 103864 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA downstream 103884 8003435 ~ 8007705 (+) True LOC118942853
TU1951729 other upstream 48154 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 240405 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 352430 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 353116 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 357624 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 639377 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 639377 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 644421 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 644421 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 950847 8850398 ~ 8851107 (+) True G1705229

Expression Profile