RNA id: TU1952098


Basic Information

Item Value
RNA id TU1952098
length 579
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1704922
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7899646 ~ 7900224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtgcactagcttTTACCAGAgttctggttgaaagtagtgcactagcttTTACCAGAgttctggttgaaagtagtgcactagcttTTTCCCAGAgttctggttgaaagtagtgcactagcttTTACCAGAgttctggtcgaaagtagtgcactataaaggaaataggttgccatttggaagGTGTATAAATAGGTCTAGTGTTTCTCctgtgagaggagagagctgtTGTGGAGCAAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGTATCCTGTTTATTGAGCAGTCTGCAGTCTGGTTTATTGAGCAGTCTGTAGTCTGGTTTATTGTGGCCTAGGATAGAAATGACATCATCTTTTTTCTTTGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952097 lncRNA downstream 3519 7894938 ~ 7896127 (-) True G1704921
TU1952096 lncRNA downstream 4958 7894421 ~ 7894688 (-) True G1704920
TU1952095 lncRNA downstream 5332 7893991 ~ 7894314 (-) True G1704919
TU1952094 lncRNA downstream 7026 7890872 ~ 7892620 (-) True G1704918
TU1952030 lncRNA downstream 17148 7878067 ~ 7882498 (-) False LOC110516645
TU1952099 lncRNA upstream 1002 7901226 ~ 7962861 (-) True G1704923
TU1952101 lncRNA upstream 3832 7904056 ~ 7904596 (-) True G1704924
TU1952104 lncRNA upstream 33133 7933357 ~ 7934313 (-) True G1704926
TU1952108 lncRNA upstream 60083 7960307 ~ 7960992 (-) True G1704930
TU1952111 lncRNA upstream 63274 7963498 ~ 7967733 (-) True G1704933
XM_036956729.1 mRNA downstream 471 7837150 ~ 7899175 (-) False LOC110516645
XM_036956728.1 mRNA downstream 494 7837150 ~ 7899152 (-) False LOC110516645
XR_005038487.1 mRNA downstream 9373 7888911 ~ 7890273 (-) True LOC118942852
XM_036956717.1 mRNA downstream 131343 7590528 ~ 7768303 (-) False LOC118936572
XM_036956720.1 mRNA downstream 131343 7590528 ~ 7768303 (-) False LOC118936572
XM_036956756.1 mRNA upstream 1488 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA upstream 1488 7901712 ~ 7924740 (-) False LOC110517214
XM_036956758.1 mRNA upstream 1488 7901712 ~ 7924740 (-) False LOC110517214
XM_036956759.1 mRNA upstream 1488 7901712 ~ 7924740 (-) False LOC110517214
XM_036956760.1 mRNA upstream 1488 7901712 ~ 7924740 (-) True LOC110517214
TU1951911 other downstream 131630 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 277805 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 298292 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 518187 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 533506 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 40925 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 88477 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 126065 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 126065 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 631511 8531735 ~ 8532803 (-) False G1705386

Expression Profile