RNA id: TU1952104


Basic Information

Item Value
RNA id TU1952104
length 595
lncRNA type antisense_over
GC content 0.57
exon number 4
gene id G1704926
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7933357 ~ 7934313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggagtacctggtagtctacagggatgagggggtGGTGTGGAGGGAAGGCCCGGGTGGATCCCTTGCGATGCAGCAGTAGAGTCTTCTGTTTCCCATCTACCATGTGTTCCTCCACCTTGGCGATGTTATGAGACACGTCATAGATCACATGCATGTCCAGGTCATCAGGAGTGGTGGTGAACACCTTGGCAAACgcctggaggagacagagacgcGGAGAAGTCGCACTGGAGTGGTCAGTTACCTGTCTCAGGCGGGGTCAGTTACCTGTCTCAGGTGGGGTCAGTTAGGGTCAGTTACCCGTCTCAGGTGTGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTAGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCTGTCTCAGGTGGGGTCAGTTAGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCCGTCTCAGGTGGGGTCAGTTACCCGTCTCAAGTGGGGTCAGTTACCCGTCTCAAGTGCGGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952101 lncRNA downstream 28761 7904056 ~ 7904596 (-) True G1704924
TU1952098 lncRNA downstream 33133 7899646 ~ 7900224 (-) True G1704922
TU1952097 lncRNA downstream 37230 7894938 ~ 7896127 (-) True G1704921
TU1952096 lncRNA downstream 38669 7894421 ~ 7894688 (-) True G1704920
TU1952095 lncRNA downstream 39043 7893991 ~ 7894314 (-) True G1704919
TU1952108 lncRNA upstream 25994 7960307 ~ 7960992 (-) True G1704930
TU1952111 lncRNA upstream 29185 7963498 ~ 7967733 (-) True G1704933
TU1952113 lncRNA upstream 29536 7963849 ~ 7967522 (-) True G1704934
TU1952119 lncRNA upstream 49207 7983520 ~ 7983812 (-) False G1704938
TU1952120 lncRNA upstream 49207 7983520 ~ 7984053 (-) True G1704938
XM_036956756.1 mRNA downstream 8617 7901712 ~ 7924740 (-) False LOC110517214
XM_036956757.1 mRNA downstream 8617 7901712 ~ 7924740 (-) False LOC110517214
XM_036956758.1 mRNA downstream 8617 7901712 ~ 7924740 (-) False LOC110517214
XM_036956759.1 mRNA downstream 8617 7901712 ~ 7924740 (-) False LOC110517214
XM_036956760.1 mRNA downstream 8617 7901712 ~ 7924740 (-) True LOC110517214
XM_036956754.1 mRNA upstream 11185 7945498 ~ 7987023 (-) False LOC110515713
XM_036956755.1 mRNA upstream 11185 7945498 ~ 7987023 (-) False LOC110515713
XM_036956753.1 mRNA upstream 11185 7945498 ~ 8003040 (-) False LOC110515713
XM_036956733.1 mRNA upstream 11185 7945498 ~ 8003041 (-) False LOC110515713
XM_036956734.1 mRNA upstream 11185 7945498 ~ 8003041 (-) False LOC110515713
TU1951911 other downstream 165341 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 311516 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 332003 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 551898 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 567217 7365547 ~ 7366140 (-) True G1704726
TU1952105 other upstream 6836 7941149 ~ 7962240 (-) True G1704927
TU1952076 other upstream 54388 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 91976 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 91976 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 597422 8531735 ~ 8532803 (-) False G1705386

Expression Profile