RNA id: TU1952108



Basic Information


Item Value
RNA id TU1952108
length 620
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1704930
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7960307 ~ 7960992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTACAGTAGTCTTCAGAGATAATGTCTGGTCACGTACAGTAGTCTTCAGGGATAATGTCTGGTCATGTACAGTAGTCTTCAGAGATAATGTCTGGTCATGTACAGTAGTCTTCAGAGATAATGTCTGGTCATGTACAGTAGTCTTCAGAGATAATGTCTGGTCACGTACAGTAGTCTTCAGAGATAATGTCTGGTCATGTACAGTAGTCTTCAGAGATAATGTCATGTAGTCTTCAGAGATAATGTCATGTAGTCTTCAGAGATAATGTCTGGTCATGTAGAGTAGTCTTCAGAGATAATGTCtggttgtgtagtgtagtcttcagagataatgtctggtcctgtagtgtagtCTTCAGAGATAATGTCATGTCGTGTGTCTTAAAGTCATGTGAAtaaatggttaataagtgatgAGCAGTAATGGCCTTTTATTTCAttctgttacagcattcaacccacataatgtaTAAAACATTCACTAGTTATTTATAGAACTGAAACCGAacccacctcaaaaagcactaatcgctcagcactctTCTCTCTGGGTTTACAAGTTCTGTTCCTGCTAAAAATactacatctctcccctctctctccccctccctctccttccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1952104 lncRNA downstream 25994 7933357 ~ 7934313 (-) True G1704926
TU1952101 lncRNA downstream 55711 7904056 ~ 7904596 (-) True G1704924
TU1952098 lncRNA downstream 60083 7899646 ~ 7900224 (-) True G1704922
TU1952097 lncRNA downstream 64180 7894938 ~ 7896127 (-) True G1704921
TU1952096 lncRNA downstream 65619 7894421 ~ 7894688 (-) True G1704920
TU1952111 lncRNA upstream 2506 7963498 ~ 7967733 (-) True G1704933
TU1952113 lncRNA upstream 2857 7963849 ~ 7967522 (-) True G1704934
TU1952119 lncRNA upstream 22528 7983520 ~ 7983812 (-) False G1704938
TU1952120 lncRNA upstream 22528 7983520 ~ 7984053 (-) True G1704938
TU1952122 lncRNA upstream 26785 7987777 ~ 7988055 (-) True G1704940
XM_036956756.1 mRNA downstream 35567 7901712 ~ 7924740 (-) False LOC110517214
XM_021595182.2 mRNA upstream 63982 8024974 ~ 8047015 (-) False pthlha
XM_036956763.1 mRNA upstream 63982 8024974 ~ 8047016 (-) False pthlha
XM_036958456.1 mRNA upstream 226342 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 845454 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 976151 8937143 ~ 8938405 (-) True LOC118942860
TU1951911 other downstream 192291 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 338466 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 358953 7588536 ~ 7601354 (-) False LOC118936572
TU1951803 other downstream 578848 7379889 ~ 7381459 (-) False LOC118942848
TU1951838 other downstream 594167 7365547 ~ 7366140 (-) True G1704726
TU1952076 other upstream 27709 7988701 ~ 8002994 (-) True LOC110515713
TU1952160 other upstream 65297 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 65297 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 570743 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 570743 8531735 ~ 8532803 (-) False G1705386

Expression Profile