RNA id: TU1951751


Basic Information

Item Value
RNA id TU1951751
length 269
lncRNA type intronic
GC content 0.51
exon number 2
gene id G1704671
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7971319 ~ 7971778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTcagtacagagggagggtaaTGTATGGAGGGTAAGGTAGgtcagtacagagggagggatggtaaTGTATGGAGGGTAAGGTAGgtcagtacagagggaggggaaTGTATGGAGGGTAAGGTAGGTCAGTACAGAGGGAAGGTAATGTATGGAGGGGAATGAAGGTCAGTGCAGATGGAGGGGAATGAAGGTCAGTGCAGAGGGAGGGGAATGTATggtaggtaaggtaaggtaaggtaggtCAGTACAGGGGGAGGGTAATGTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951705 lncRNA upstream 27745 7941952 ~ 7943574 (+) True yt6j
TU1951739 lncRNA upstream 42491 7928449 ~ 7928828 (+) True G1704659
TU1951712 lncRNA upstream 71768 7898274 ~ 7899551 (+) True G1704639
TU1951732 lncRNA upstream 94819 7875229 ~ 7876500 (+) True G1704654
TU1951730 lncRNA upstream 119022 7850911 ~ 7852297 (+) True G1704652
TU1951756 lncRNA downstream 3988 7975766 ~ 7976717 (+) True G1704675
TU1951766 lncRNA downstream 16433 7988211 ~ 7988453 (+) True G1704683
TU1952127 lncRNA downstream 38370 8010148 ~ 8010428 (+) True G1704945
TU1952128 lncRNA downstream 39846 8011624 ~ 8012083 (+) True G1704946
TU1952132 lncRNA downstream 46403 8018181 ~ 8018431 (+) True G1704950
XM_036956483.1 mRNA upstream 27735 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 27735 7925016 ~ 7943584 (+) False yt6j
NM_001160647.1 mRNA upstream 27736 7925049 ~ 7943583 (+) False yt6j
XM_036956730.1 mRNA upstream 87998 7882249 ~ 7883321 (+) True LOC118942851
XM_036956731.1 mRNA upstream 92729 7873615 ~ 7878590 (+) True LOC118936573
XM_036956762.1 mRNA downstream 31637 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA downstream 31657 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA downstream 32513 8004291 ~ 8004425 (+) True LOC118943012
XM_036958455.1 mRNA downstream 156707 8128485 ~ 8132838 (+) True LOC118942992
XM_036956764.1 mRNA downstream 553178 8524956 ~ 8532810 (+) True LOC118942854
TU1951729 other upstream 121199 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 313450 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 425475 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 426161 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 430669 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 567150 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 567150 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 572194 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 572194 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 878620 8850398 ~ 8851107 (+) True G1705229

Expression Profile