RNA id: TU1951756


Basic Information

Item Value
RNA id TU1951756
length 414
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G1704675
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7975766 ~ 7976717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAGTACTGCAGAACTAACTGAGCCAGGACAGACAGTCTAGTACTGCAGAACTAACTGAGCCAGGACAGACAGTCTAGTACTGCAGAACTAACTGAGCTAGGACAGACAGTCTAGTACTGCAGAACTAACTGAGCTAGGACAGACAGTCTAGTACTGCAGAACTAACTGAGCTAGGACAGACAGTCTAGTACTGCAGAACTAACTGAGCCAGGACAGACAGTCTAGTACTGCAGAACGAACTGAGCCAGGACAGACAGTCTAGTACTGTTGAACTAACCAGGACAATAGGAATGTGCTGCGGTTCAACCAGGAAGAACTTGTCGTAACGAACCACCGTCTCGAAGAACTCCAGCGACACAGACGTGTGTTGGTAACCACtgagaccagaggagaccagcTGAGGAGACAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951751 lncRNA upstream 3988 7971319 ~ 7971778 (+) True G1704671
TU1951705 lncRNA upstream 32192 7941952 ~ 7943574 (+) True yt6j
TU1951739 lncRNA upstream 46938 7928449 ~ 7928828 (+) True G1704659
TU1951712 lncRNA upstream 76215 7898274 ~ 7899551 (+) True G1704639
TU1951732 lncRNA upstream 99266 7875229 ~ 7876500 (+) True G1704654
TU1951766 lncRNA downstream 11494 7988211 ~ 7988453 (+) True G1704683
TU1952127 lncRNA downstream 33431 8010148 ~ 8010428 (+) True G1704945
TU1952128 lncRNA downstream 34907 8011624 ~ 8012083 (+) True G1704946
TU1952132 lncRNA downstream 41464 8018181 ~ 8018431 (+) True G1704950
TU1952143 lncRNA downstream 48306 8025023 ~ 8025554 (+) True G1704956
XM_036956483.1 mRNA upstream 32182 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 32182 7925016 ~ 7943584 (+) False yt6j
NM_001160647.1 mRNA upstream 32183 7925049 ~ 7943583 (+) False yt6j
XM_036956730.1 mRNA upstream 92445 7882249 ~ 7883321 (+) True LOC118942851
XM_036956731.1 mRNA upstream 97176 7873615 ~ 7878590 (+) True LOC118936573
XM_036956762.1 mRNA downstream 26698 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA downstream 26718 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA downstream 27574 8004291 ~ 8004425 (+) True LOC118943012
XM_036958455.1 mRNA downstream 151768 8128485 ~ 8132838 (+) True LOC118942992
XM_036956764.1 mRNA downstream 548239 8524956 ~ 8532810 (+) True LOC118942854
TU1951729 other upstream 125646 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 317897 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 429922 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 430608 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 435116 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 562211 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 562211 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 567255 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 567255 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 873681 8850398 ~ 8851107 (+) True G1705229

Expression Profile