RNA id: TU1952081


Basic Information

Item Value
RNA id TU1952081
length 510
lncRNA type read_through
GC content 0.50
exon number 2
gene id G1704909
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8003455 ~ 8009523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACGCATCAACAGTTTCCTTTCTCCTGTAATCTCTCTTTAAAGGGCAGTGTCTTTAAACTACTTCATGTGTGCAACAGTAATACTGACTTCCAGCCAGACCACTGACACCATCCATTTCCATAATAGTTTATTGGCACATACTGAAACACATTAAAGAACATATGCATTCAATACTGGTGAATCTTGGCAGTTCATTTGTTTCCCCAATCCCACCCATGAGCCCACCCTGTCCCCTGTGCTACCTACCAGACCACAGTAGACTGTCTCTCCGTTGGCCTTCTTCATCTTCCTCAGCTGGGAGACAAAGTACCAGAAGCGAGACTTGGCCACCACGTGGTTAGGAGCGAAGATCCTCATGCggtagagaggaggggtggggttcTTAACCGAGGGCAGGAGGCGCCCAACGACTTTGTACTCCCGAAGTGTGCCAGACGCCTTCATGGTGTCTCTCGCTGACTGCGAACTGGGAAAGAGGAAGTAGTAGGGCGGAGACTCCGGATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952122 lncRNA downstream 15400 7987777 ~ 7988055 (-) True G1704940
TU1952120 lncRNA downstream 19402 7983520 ~ 7984053 (-) True G1704938
TU1952119 lncRNA downstream 19643 7983520 ~ 7983812 (-) False G1704938
TU1952111 lncRNA downstream 35722 7963498 ~ 7967733 (-) True G1704933
TU1952113 lncRNA downstream 35933 7963849 ~ 7967522 (-) True G1704934
TU1952078 lncRNA upstream 1233 8006213 ~ 8009523 (-) True G1704909
TU1952129 lncRNA upstream 6276 8011256 ~ 8011649 (-) True G1704947
TU1952131 lncRNA upstream 11638 8016618 ~ 8017608 (-) True G1704949
TU1952156 lncRNA upstream 20016 8024996 ~ 8025547 (-) False pthlha
TU1952158 lncRNA upstream 20667 8025647 ~ 8026207 (-) False pthlha
XM_036956733.1 mRNA downstream 414 7945498 ~ 8003041 (-) False LOC110515713
XM_036956734.1 mRNA downstream 414 7945498 ~ 8003041 (-) False LOC110515713
XM_036956735.1 mRNA downstream 414 7945498 ~ 8003041 (-) False LOC110515713
XM_036956736.1 mRNA downstream 414 7945498 ~ 8003041 (-) False LOC110515713
XM_036956737.1 mRNA downstream 414 7945498 ~ 8003041 (-) False LOC110515713
XM_021595182.2 mRNA upstream 19994 8024974 ~ 8047015 (-) False pthlha
XM_036956763.1 mRNA upstream 19994 8024974 ~ 8047016 (-) False pthlha
XM_036958456.1 mRNA upstream 182354 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 801466 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 932163 8937143 ~ 8938405 (-) True LOC118942860
TU1952076 other downstream 461 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 41215 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 235439 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 381614 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 402101 7588536 ~ 7601354 (-) False LOC118936572
TU1952160 other upstream 21309 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 21309 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 526755 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 526755 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 526755 8531735 ~ 8532803 (-) False G1705386

Expression Profile