RNA id: TU1952079


Basic Information

Item Value
RNA id TU1952079
length 705
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id G1704909
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8003455 ~ 8009523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAACCAATTCTTAGCCAAACATGTACAAAAATTAAACTCAAAAACAAAATGGCTTCTTTTCTACAATTAGAATTTTTATTGTGCcgcacaaagtgaaaacagaggTTATTTCCTTTAGAAGAAGGTGTTTGGTCTCTTGGTGGTGAAGCGGGGCTTGTGTTGGCGACGCAGGACCCTGTGGGGCAGGGGGAACTTGATCTTGGAGTCGTGGAACTGCTTGATGGCAGGTCTGCGGCATTTATTGGCAGCGATCTCCTGGACCTTCATGATGTGGATGGAGTGGGCACGGGCACGATGGCGAGCGCCCATATCACGAAGCACTGGGTGACTGCTGCAGAGGTGGTCAGGTCTCTGTATTCTCGGTACATGTTGTGGGTTCCGCTACGGGAGTCGTAACGCAACCAGATGCCAAAGTTCTTCACCTTCAGGGGAGTCTTCTCGTGCACCAGACCACAGTAGACTGTCTCTCCGTTGGCCTTCTTCATCTTCCTCAGCTGGGAGACAAAGTACCAGAAGCGAGACTTGGCCACCACGTGGTTAGGAGCGAAGATCCTCATGCggtagagaggaggggtggggttcTTAACCGAGGGCAGGAGGCGCCCAACGACTTTGTACTCCCGAAGCTGTGTGGATGGAGCAGGAGAGGAAGAAATGTGAGTAACGTGCAATACAATGTCCATAGTTGTCCATAGATACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952122 lncRNA downstream 16421 7987777 ~ 7988055 (-) True G1704940
TU1952120 lncRNA downstream 20423 7983520 ~ 7984053 (-) True G1704938
TU1952119 lncRNA downstream 20664 7983520 ~ 7983812 (-) False G1704938
TU1952111 lncRNA downstream 36743 7963498 ~ 7967733 (-) True G1704933
TU1952129 lncRNA upstream 1733 8011256 ~ 8011649 (-) True G1704947
TU1952131 lncRNA upstream 7095 8016618 ~ 8017608 (-) True G1704949
TU1952156 lncRNA upstream 15473 8024996 ~ 8025547 (-) False pthlha
TU1952158 lncRNA upstream 16124 8025647 ~ 8026207 (-) False pthlha
TU1952159 lncRNA upstream 16284 8025807 ~ 8026207 (-) False pthlha
XM_036956748.1 mRNA downstream 1435 7945498 ~ 8003041 (-) False LOC110515713
XM_021595182.2 mRNA upstream 15451 8024974 ~ 8047015 (-) False pthlha
XM_036956763.1 mRNA upstream 15451 8024974 ~ 8047016 (-) False pthlha
XM_036958456.1 mRNA upstream 177811 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 796923 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 927620 8937143 ~ 8938405 (-) True LOC118942860
TU1952076 other downstream 1482 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 42236 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 236460 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 382635 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 403122 7588536 ~ 7601354 (-) False LOC118936572
TU1952160 other upstream 16766 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 16766 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 522212 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 522212 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 522212 8531735 ~ 8532803 (-) False G1705386

Expression Profile